Started by user Sandro La Bruzzo Obtained BETA_scholexplorer/Jenkinsfile from git gitea@code-repo.d4science.org:D-Net/dnet-hadoop-deployment.git [Pipeline] Start of Pipeline [Pipeline] node Running on ip-90-147-189-52.pa1.garrservices.it in /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: NONE using credential dnet-hadoop-deployment-credentials Cloning the remote Git repository Cloning repository gitea@code-repo.d4science.org:D-Net/dnet-hadoop-deployment.git > git init /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer # timeout=10 Fetching upstream changes from gitea@code-repo.d4science.org:D-Net/dnet-hadoop-deployment.git > git --version # timeout=10 > git --version # 'git version 2.17.1' using GIT_SSH to set credentials User for CI/CD Verifying host key using known hosts file > git fetch --tags --progress -- gitea@code-repo.d4science.org:D-Net/dnet-hadoop-deployment.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 8f00379c5311304deb3788ca28d1f24412781a8b (refs/remotes/origin/scholexplorer_cleaning) Commit message: "updated deployment scholix workflow. - updated on both BETA_scholexplorer - added the same wf also on BETA in this way, scholexplorer will be synchronized with beta deployment" > git config remote.origin.url gitea@code-repo.d4science.org:D-Net/dnet-hadoop-deployment.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/scholexplorer_cleaning^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 8f00379c5311304deb3788ca28d1f24412781a8b # timeout=10 > git rev-list --no-walk 8f00379c5311304deb3788ca28d1f24412781a8b # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Setup) [Pipeline] script [Pipeline] { [Pipeline] readFile [Pipeline] sh + date +%Y-%m-%d + echo /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 [Pipeline] pwd [Pipeline] } [Pipeline] // script [Pipeline] sshagent [ssh-agent] Using credentials git.dnet (User for CI/CD) [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-wNSgMW2xY9Ux/agent.26951 SSH_AGENT_PID=26953 Running ssh-add (command line suppressed) Identity added: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/private_key_8872886550085656564.key (git.dnet) [ssh-agent] Started. [Pipeline] { [Pipeline] sh + ssh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl rm -rf /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 && mkdir -p /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 + scp -r /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/deploy_release.sh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl:/tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 [Pipeline] } $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 26953 killed; [ssh-agent] Stopped. [Pipeline] // sshagent [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Checkout) [Pipeline] dir Running in /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop [Pipeline] { [Pipeline] git The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://code-repo.d4science.org/D-Net/dnet-hadoop > git init /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop # timeout=10 Fetching upstream changes from https://code-repo.d4science.org/D-Net/dnet-hadoop > git --version # timeout=10 > git --version # 'git version 2.17.1' > git fetch --tags --progress -- https://code-repo.d4science.org/D-Net/dnet-hadoop +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 9c1df1507157c5fcbfa35842c67c8887b137dedc (refs/remotes/origin/master) > git config remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 Commit message: "null values in date range conditions" First time build. Skipping changelog. [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Install) [Pipeline] configFileProvider provisioning config files... copy managed file [dnet-hadoop-build.properties] to file:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config4368493303964057396tmp [Pipeline] { [Pipeline] load [Pipeline] { (/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config4368493303964057396tmp) [Pipeline] } [Pipeline] // load [Pipeline] tool [Pipeline] tool [Pipeline] withEnv [Pipeline] { [Pipeline] sh > git checkout -f 9c1df1507157c5fcbfa35842c67c8887b137dedc # timeout=10 > git branch -a -v --no-abbrev # timeout=10 > git checkout -b master 9c1df1507157c5fcbfa35842c67c8887b137dedc # timeout=10 + cd dnet-hadoop + mvn clean install -DskipTests -Dmaven.repo.local=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] dhp-code-style [jar] [INFO] dhp [pom] [INFO] dhp-build [pom] [INFO] dhp-build-assembly-resources [jar] [INFO] dhp-build-properties-maven-plugin [maven-plugin] [INFO] dhp-common [jar] [INFO] dhp-workflows [pom] [INFO] dhp-workflow-profiles [jar] [INFO] dhp-aggregation [jar] [INFO] dhp-distcp [jar] [INFO] dhp-actionmanager [jar] [INFO] dhp-graph-mapper [jar] [INFO] dhp-dedup-openaire [jar] [INFO] dhp-enrichment [jar] [INFO] dhp-graph-provision [jar] [INFO] dhp-blacklist [jar] [INFO] dhp-stats-update [jar] [INFO] dhp-stats-promote [jar] [INFO] dhp-usage-stats-build [jar] [INFO] dhp-usage-raw-data-update [jar] [INFO] dhp-broker-events [jar] [INFO] dhp-doiboost [jar] [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-code-style >-------------------- [INFO] Building dhp-code-style 1.2.5-SNAPSHOT [1/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-code-style --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-code-style/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ dhp-code-style --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ dhp-code-style --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-code-style --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-code-style/1.2.5-SNAPSHOT/dhp-code-style-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-code-style/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-code-style/1.2.5-SNAPSHOT/dhp-code-style-1.2.5-SNAPSHOT.pom [INFO] [INFO] -------------------------< eu.dnetlib.dhp:dhp >------------------------- [INFO] Building dhp 1.2.5-SNAPSHOT [2/22] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp --- [INFO] Total Files Processed: 0 in 00:00.007 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp/1.2.5-SNAPSHOT/dhp-1.2.5-SNAPSHOT.pom [INFO] [INFO] ----------------------< eu.dnetlib.dhp:dhp-build >---------------------- [INFO] Building dhp-build 1.2.5-SNAPSHOT [3/22] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-build --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build/1.2.5-SNAPSHOT/dhp-build-1.2.5-SNAPSHOT.pom [INFO] [INFO] ------------< eu.dnetlib.dhp:dhp-build-assembly-resources >------------- [INFO] Building dhp-build-assembly-resources 1.2.5-SNAPSHOT [4/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build-assembly-resources --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-assembly-resources --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-assembly-resources --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-assembly-resources --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-assembly-resources --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build-assembly-resources --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-build-assembly-resources --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-build-assembly-resources --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-assembly-resources/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.pom [INFO] [INFO] ----------< eu.dnetlib.dhp:dhp-build-properties-maven-plugin >---------- [INFO] Building dhp-build-properties-maven-plugin 1.2.5-SNAPSHOT [5/22] [INFO] ----------------------------[ maven-plugin ]---------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build-properties-maven-plugin --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-properties-maven-plugin --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 4 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 4 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-properties-maven-plugin --- [INFO] Total Files Processed: 4 in 00:00.501 [INFO] Already Sorted: 4 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-properties-maven-plugin --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/classes [INFO] [INFO] --- maven-plugin-plugin:3.2:descriptor (default-descriptor) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to read mojo metadata. [INFO] Applying mojo extractor for language: java [INFO] Mojo extractor for language: java found 2 mojo descriptors. [INFO] Applying mojo extractor for language: bsh [INFO] Mojo extractor for language: bsh found 0 mojo descriptors. [INFO] Applying mojo extractor for language: java-annotations [INFO] Mojo extractor for language: java-annotations found 0 mojo descriptors. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-properties-maven-plugin --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-properties-maven-plugin --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build-properties-maven-plugin --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-build-properties-maven-plugin --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-plugin-plugin:3.2:addPluginArtifactMetadata (default-addPluginArtifactMetadata) @ dhp-build-properties-maven-plugin --- [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ dhp-build-properties-maven-plugin --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-build-properties-maven-plugin --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ---------------------< eu.dnetlib.dhp:dhp-common >---------------------- [INFO] Building dhp-common 1.2.5-SNAPSHOT [6/22] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from dnet45-bootstrap-release: 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https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/org/apache/cxf/cxf-core/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/org/apache/cxf/cxf-core/maven-metadata.xml Downloading from central: https://repo.maven.apache.org/maven2/org/apache/cxf/cxf-core/maven-metadata.xml Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/org/apache/cxf/cxf-core/maven-metadata.xml Progress (1): 1.4/3.0 kB Progress (1): 2.7/3.0 kB Progress (1): 3.0 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/cxf/cxf-core/maven-metadata.xml (3.0 kB at 19 kB/s) Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from central: 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Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/log4j/log4j/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/log4j/log4j/maven-metadata.xml Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/log4j/log4j/maven-metadata.xml Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/log4j/log4j/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/log4j/log4j/maven-metadata.xml Downloading from central: https://repo.maven.apache.org/maven2/log4j/log4j/maven-metadata.xml Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/log4j/log4j/maven-metadata.xml Progress (1): 750 B Downloaded from central: https://repo.maven.apache.org/maven2/log4j/log4j/maven-metadata.xml (750 B at 11 kB/s) Progress (1): 373 B Downloaded from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/log4j/log4j/maven-metadata.xml (373 B at 2.2 kB/s) Progress (1): 451 B Downloaded from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/log4j/log4j/maven-metadata.xml (451 B at 665 B/s) Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/com/ximpleware/vtd-xml/maven-metadata.xml Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/com/ximpleware/vtd-xml/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/com/ximpleware/vtd-xml/maven-metadata.xml Downloading from dnet45-bootstrap-release: 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Progress (1): 114/230 kB Progress (1): 118/230 kB Progress (1): 122/230 kB Progress (1): 127/230 kB Progress (1): 131/230 kB Progress (1): 135/230 kB Progress (1): 139/230 kB Progress (1): 143/230 kB Progress (1): 147/230 kB Progress (1): 151/230 kB Progress (1): 155/230 kB Progress (1): 159/230 kB Progress (1): 163/230 kB Progress (1): 168/230 kB Progress (1): 172/230 kB Progress (1): 176/230 kB Progress (1): 180/230 kB Progress (1): 184/230 kB Progress (1): 188/230 kB Progress (1): 192/230 kB Progress (1): 196/230 kB Progress (1): 200/230 kB Progress (1): 204/230 kB Progress (1): 209/230 kB Progress (1): 213/230 kB Progress (1): 217/230 kB Progress (1): 221/230 kB Progress (1): 225/230 kB Progress (1): 229/230 kB Progress (1): 230 kB Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dhp-schemas/2.12.1-patched/dhp-schemas-2.12.1-patched.jar (230 kB at 892 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-common --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 2 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 2 Scala sources and 56 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 64 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 64 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 64 in 00:00.378 [INFO] Already Sorted: 64 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-common >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 2 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 64 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 64 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 64 in 00:00.307 [INFO] Already Sorted: 64 [INFO] Needed Sorting: 0 [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-common <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-common --- model contains 91 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 56 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 14 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 8 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-common --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-common --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-common --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/dhp-common-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-common --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/target/dhp-common-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-common/1.2.5-SNAPSHOT/dhp-common-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-common/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-common/1.2.5-SNAPSHOT/dhp-common-1.2.5-SNAPSHOT.pom [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-workflows >-------------------- [INFO] Building dhp-workflows 1.2.5-SNAPSHOT [7/22] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-workflows --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflows --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflows --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflows --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflows --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-workflows --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-workflows --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/target/dhp-workflows-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-workflows --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-workflows/1.2.5-SNAPSHOT/dhp-workflows-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/target/dhp-workflows-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-workflows/1.2.5-SNAPSHOT/dhp-workflows-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-workflow-profiles >---------------- [INFO] Building dhp-workflow-profiles 1.2.5-SNAPSHOT [8/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-workflow-profiles --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflow-profiles --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflow-profiles --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflow-profiles --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 22 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-workflow-profiles --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-workflow-profiles --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-workflow-profiles --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-workflow-profiles --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-workflow-profiles --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-aggregation >------------------- [INFO] Building dhp-aggregation 1.2.5-SNAPSHOT [9/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-aggregation --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 19 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 16 Scala sources and 79 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/classes ... [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipfinder/SparkAtomicActionScoreJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipfinder/SparkAtomicActionScoreJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 101 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 101 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 101 in 00:01.082 [INFO] Already Sorted: 101 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 65 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-aggregation >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 19 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 101 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 101 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 101 in 00:00.614 [INFO] Already Sorted: 101 [INFO] Needed Sorting: 0 [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-aggregation <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-aggregation --- model contains 149 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 79 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionUsageJob.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionUsageJob.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 79 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 22 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/test-classes ... [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 22 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-aggregation --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-aggregation --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-aggregation --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-aggregation --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-aggregation --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ---------------------< eu.dnetlib.dhp:dhp-distcp >---------------------- [INFO] Building dhp-distcp 1.2.5-SNAPSHOT [10/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-distcp --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-distcp --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-distcp --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-distcp --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-distcp --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-distcp --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-distcp --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-distcp --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-distcp --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-distcp --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-distcp --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-distcp --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/target/dhp-distcp-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-distcp --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/target/dhp-distcp-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-distcp --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/target/dhp-distcp-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-distcp/1.2.5-SNAPSHOT/dhp-distcp-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-distcp/1.2.5-SNAPSHOT/dhp-distcp-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-distcp/target/dhp-distcp-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-distcp/1.2.5-SNAPSHOT/dhp-distcp-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-actionmanager >------------------ [INFO] Building dhp-actionmanager 1.2.5-SNAPSHOT [11/22] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Progress (1): 453 B Progress (2): 453 B | 343 B Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml (453 B at 3.2 kB/s) Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml (343 B at 2.0 kB/s) Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml Progress (1): 408 B Progress (2): 408 B | 515 B Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml (408 B at 1.5 kB/s) Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml (515 B at 2.2 kB/s) Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/eu/dnetlib/cnr-rmi-api/maven-metadata.xml Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/org/apache/cxf/cxf-core/maven-metadata.xml Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/org/apache/cxf/cxf-core/maven-metadata.xml Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/log4j/log4j/maven-metadata.xml Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/log4j/log4j/maven-metadata.xml Progress (1): 451 B Progress (2): 451 B | 409 B Downloaded from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/log4j/log4j/maven-metadata.xml (451 B at 2.2 kB/s) Downloaded from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/log4j/log4j/maven-metadata.xml (409 B at 1.9 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-actionmanager --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-actionmanager --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-actionmanager --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 9 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 9 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-actionmanager --- [INFO] Total Files Processed: 9 in 00:00.039 [INFO] Already Sorted: 9 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-actionmanager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 35 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-actionmanager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-actionmanager --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-actionmanager --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-actionmanager --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-actionmanager --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-actionmanager --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-graph-mapper >------------------- [INFO] Building dhp-graph-mapper 1.2.5-SNAPSHOT [12/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-mapper --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 15 Scala sources and 53 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/sx/graph/SparkCreateInputGraph.scala:113: abstract type T is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveEntities.scala:87: match may not be exhaustive. It would fail on the following inputs: datasource, organization, project [WARNING] two warnings found [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java:75: non-varargs call of varargs method with inexact argument type for last parameter; cast to java.lang.Object for a varargs call cast to java.lang.Object[] for a non-varargs call and to suppress this warning [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 69 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 69 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-mapper --- [INFO] Total Files Processed: 69 in 00:00.206 [INFO] Already Sorted: 69 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 91 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 53 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 115 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 6 Scala sources and 16 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-mapper --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-mapper --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-graph-mapper --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] -----------------< eu.dnetlib.dhp:dhp-dedup-openaire >------------------ [INFO] Building dhp-dedup-openaire 1.2.5-SNAPSHOT [13/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-dedup-openaire --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-dedup-openaire --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-dedup-openaire --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 1 Scala source and 27 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateDedupRecord.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateDedupRecord.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 35 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 35 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-dedup-openaire --- [INFO] Total Files Processed: 35 in 00:00.135 [INFO] Already Sorted: 35 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 20 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-dedup-openaire --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 27 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 52 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 8 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-dedup-openaire --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-dedup-openaire --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-dedup-openaire --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-dedup-openaire --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-dedup-openaire --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-dedup-openaire --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-enrichment >-------------------- [INFO] Building dhp-enrichment 1.2.5-SNAPSHOT [14/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-enrichment --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-enrichment --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-enrichment --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 79 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 79 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-enrichment --- [INFO] Total Files Processed: 79 in 00:00.187 [INFO] Already Sorted: 79 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 37 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-enrichment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 64 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 66 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-enrichment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 15 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-enrichment --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-enrichment --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-enrichment --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-enrichment --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-enrichment --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] -----------------< eu.dnetlib.dhp:dhp-graph-provision >----------------- [INFO] Building dhp-graph-provision 1.2.5-SNAPSHOT [15/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-provision --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-provision --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-provision --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-provision --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 31 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Some input files use or override a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 41 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 41 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-provision --- [INFO] Total Files Processed: 41 in 00:00.197 [INFO] Already Sorted: 41 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 23 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 31 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Some input files use or override a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 111 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 10 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-provision --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-provision --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-provision --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-graph-provision --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-graph-provision --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-blacklist >-------------------- [INFO] Building dhp-blacklist 1.2.5-SNAPSHOT [16/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-blacklist --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-blacklist --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-blacklist --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 5 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 5 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-blacklist --- [INFO] Total Files Processed: 5 in 00:00.020 [INFO] Already Sorted: 5 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-blacklist --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-blacklist --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-blacklist --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-blacklist --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-blacklist --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-blacklist --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-blacklist --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-stats-update >------------------- [INFO] Building dhp-stats-update 1.2.5-SNAPSHOT [17/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-update --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-update --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 30 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-update --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-update --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-stats-update --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-stats-update --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-stats-promote >------------------ [INFO] Building dhp-stats-promote 1.2.5-SNAPSHOT [18/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-promote --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-promote --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-promote --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-promote --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-promote --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-promote --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-promote --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-stats-promote --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-stats-promote --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-usage-stats-build >---------------- [INFO] Building dhp-usage-stats-build 1.2.5-SNAPSHOT [19/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-usage-stats-build --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-stats-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-stats-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-stats-build --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 7 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 7 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-stats-build --- [INFO] Total Files Processed: 7 in 00:00.035 [INFO] Already Sorted: 7 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-stats-build --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-stats-build --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-stats-build --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-usage-stats-build --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-usage-stats-build --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-usage-stats-build --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-usage-stats-build --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --------------< eu.dnetlib.dhp:dhp-usage-raw-data-update >-------------- [INFO] Building dhp-usage-raw-data-update 1.2.5-SNAPSHOT [20/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-usage-raw-data-update --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-raw-data-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-raw-data-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-raw-data-update --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 10 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 10 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-raw-data-update --- [INFO] Total Files Processed: 10 in 00:00.152 [INFO] Already Sorted: 10 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-raw-data-update --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/src/main/java/eu/dnetlib/oa/graph/usagerawdata/export/SarcStats.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/src/main/java/eu/dnetlib/oa/graph/usagerawdata/export/SarcStats.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-raw-data-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-raw-data-update --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-usage-raw-data-update --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-usage-raw-data-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-usage-raw-data-update --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-usage-raw-data-update --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-broker-events >------------------ [INFO] Building dhp-broker-events 1.2.5-SNAPSHOT [21/22] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml Progress (1): 1.3 kB Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml (1.3 kB at 960 B/s) Progress (1): 1.0 kB Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml (1.0 kB at 665 B/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-broker-events --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-broker-events --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-broker-events --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 87 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 87 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-broker-events --- [INFO] Total Files Processed: 87 in 00:00.290 [INFO] Already Sorted: 87 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 20 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-broker-events --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 80 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-broker-events --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-broker-events --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-broker-events --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-broker-events --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-broker-events --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-broker-events --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-doiboost >--------------------- [INFO] Building dhp-doiboost 1.2.5-SNAPSHOT [22/22] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-doiboost --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-doiboost --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.scalafmt.conf [INFO] Scalafmt results: 0 of 22 were unformatted Details: Correctly formatted: DoiBoostMappingUtil.scala Correctly formatted: SparkGenerateDoiBoost.scala Correctly formatted: ORCIDToOAF.scala Correctly formatted: SparkPreprocessORCID.scala Correctly formatted: SparkConvertORCIDToOAF.scala Correctly formatted: GenerateCrossrefDataset.scala Correctly formatted: Crossref2Oaf.scala Correctly formatted: CrossrefDataset.scala Correctly formatted: SparkMapDumpIntoOAF.scala Correctly formatted: UnpackCrtossrefEntries.scala Correctly formatted: SparkMapUnpayWallToOAF.scala Correctly formatted: UnpayWallToOAF.scala Correctly formatted: SparkGenerateDOIBoostActionSet.scala Correctly formatted: SparkImportMagIntoDataset.scala Correctly formatted: MagDataModel.scala Correctly formatted: SparkProcessMAG.scala Correctly formatted: MappingORCIDToOAFTest.scala Correctly formatted: DoiBoostHostedByMapTest.scala Correctly formatted: NormalizeDoiTest.scala Correctly formatted: CrossrefMappingTest.scala Correctly formatted: UnpayWallMappingTest.scala Correctly formatted: MAGMappingTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-doiboost --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-doiboost --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 16 Scala sources and 32 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 37 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 37 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-doiboost --- [INFO] Total Files Processed: 37 in 00:00.196 [INFO] Already Sorted: 37 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 36 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-doiboost --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 32 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 47 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 6 Scala sources and 5 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/test-classes ... [WARNING] [Warn] : there was one feature warning; re-run with -feature for details [WARNING] one warning found [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-doiboost --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-doiboost --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-doiboost --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-doiboost --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (integration-test-package) @ dhp-doiboost --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dhp-doiboost --- [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT.jar [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/pom.xml to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT.pom [INFO] Installing /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT-tests.jar to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT-tests.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for dhp 1.2.5-SNAPSHOT: [INFO] [INFO] dhp-code-style ..................................... SUCCESS [ 0.889 s] [INFO] dhp ................................................ SUCCESS [ 1.846 s] [INFO] dhp-build .......................................... SUCCESS [ 0.090 s] [INFO] dhp-build-assembly-resources ....................... SUCCESS [ 0.879 s] [INFO] dhp-build-properties-maven-plugin .................. SUCCESS [ 4.754 s] [INFO] dhp-common ......................................... SUCCESS [ 44.852 s] [INFO] dhp-workflows ...................................... SUCCESS [ 1.005 s] [INFO] dhp-workflow-profiles .............................. SUCCESS [ 0.419 s] [INFO] dhp-aggregation .................................... SUCCESS [01:08 min] [INFO] dhp-distcp ......................................... SUCCESS [ 0.219 s] [INFO] dhp-actionmanager .................................. SUCCESS [ 4.423 s] [INFO] dhp-graph-mapper ................................... SUCCESS [ 48.215 s] [INFO] dhp-dedup-openaire ................................. SUCCESS [ 17.289 s] [INFO] dhp-enrichment ..................................... SUCCESS [ 3.835 s] [INFO] dhp-graph-provision ................................ SUCCESS [ 7.314 s] [INFO] dhp-blacklist ...................................... SUCCESS [ 1.772 s] [INFO] dhp-stats-update ................................... SUCCESS [ 0.182 s] [INFO] dhp-stats-promote .................................. SUCCESS [ 0.182 s] [INFO] dhp-usage-stats-build .............................. SUCCESS [ 2.615 s] [INFO] dhp-usage-raw-data-update .......................... SUCCESS [ 1.695 s] [INFO] dhp-broker-events .................................. SUCCESS [ 4.722 s] [INFO] dhp-doiboost ....................................... SUCCESS [ 48.768 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 04:25 min [INFO] Finished at: 2023-03-23T15:11:20Z [INFO] ------------------------------------------------------------------------ [Pipeline] } [Pipeline] // withEnv [Pipeline] } Deleting 1 temporary files [Pipeline] // configFileProvider [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Scholexplorer_createFinalGraph) [Pipeline] configFileProvider provisioning config files... copy managed file [dnet-hadoop-build.properties] to file:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config7843786049977258329tmp [Pipeline] { [Pipeline] load [Pipeline] { (/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config7843786049977258329tmp) [Pipeline] } [Pipeline] // load [Pipeline] tool [Pipeline] tool [Pipeline] withEnv [Pipeline] { [Pipeline] sshagent [ssh-agent] Using credentials git.dnet (User for CI/CD) [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-8f336I74k3Om/agent.27937 SSH_AGENT_PID=27939 Running ssh-add (command line suppressed) Identity added: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/private_key_5423811756126419151.key (git.dnet) [ssh-agent] Started. [Pipeline] { [Pipeline] sh + cd dnet-hadoop/dhp-workflows/dhp-graph-mapper + mvn clean package -Poozie-package,deploy -Dworkflow.source.dir=eu/dnetlib/dhp/sx/graph/finalGraph -DdhpConnectionProperties=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties -DskipTests -Dmaven.repo.local=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2 [INFO] Scanning for projects... [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-graph-mapper >------------------- [INFO] Building dhp-graph-mapper 1.2.5-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-mapper --- [INFO] Deleting /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:generate-properties (default) @ dhp-graph-mapper --- [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-connection-properties-file-existence) @ dhp-graph-mapper --- [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (reading-dhp-properties) @ dhp-graph-mapper --- [INFO] Loading /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties [INFO] [INFO] --- git-commit-id-plugin:2.1.11:revision (default) @ dhp-graph-mapper --- [info] dotGitDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.git [info] git.build.user.name null [info] git.build.user.email null [info] Using environment variable based branch name. GIT_BRANCH = origin/scholexplorer_cleaning [info] git.branch origin/scholexplorer_cleaning [info] Tag refs [ [Ref[refs/tags/1.0.1=26bd6211a3c51d2d2358b6cc72004808d8e318ce], Ref[refs/tags/archive/bipFinder_master_test=d6686dd7cf7b73d5efa8b333aca59c54e83fcf0a], Ref[refs/tags/archive/dedupTest=36f8f2ea66412f909cd8983cc0718b0ab6e10641], Ref[refs/tags/archive/islookup_timeout=2c4196ab22872046d6d7ae994d70a5dc57e47e19], Ref[refs/tags/archive/junit5=9dff4adbc3d4bbc2d1a4587f5424d7b7190ace4d], Ref[refs/tags/archive/master_pre_stable_ids=ef612105ba883c9a4b12a35f62eec420185db0ef], Ref[refs/tags/dhp-1.0.2=fdf024d17efe96629fdcafc00888429233e8a42b], Ref[refs/tags/dhp-1.0.3=d9fdf571c86cfdbd27e1153c587a1da7f2525e33], Ref[refs/tags/dhp-1.0.4=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1], Ref[refs/tags/dhp-1.1.5=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570], Ref[refs/tags/dhp-1.1.6=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10], Ref[refs/tags/dhp-1.1.7=cb5f978660ee4bc6f8d547caf7709a5736a3a24d], Ref[refs/tags/dhp-1.2.0=85c96bd95517be30d93692630f29806f39c68b8c], Ref[refs/tags/dhp-1.2.1=2b632494536e76ba5b190d8bda8841e79b7a4704], Ref[refs/tags/dhp-1.2.2=40bb2202a2df622928ce367d205d2a3c18ec4000], Ref[refs/tags/dhp-1.2.3=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd], Ref[refs/tags/dhp-1.2.4=fdbee9aadd3ee119c777c94b53d762ece6352061]] ] [info] Resolved tag [ 1.0.1 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 11:47:41 2019 +0100] ], points at [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ] [info] Resolved tag [ dhp-1.0.2 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 12:08:50 2019 +0100] ], points at [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ] [info] Resolved tag [ dhp-1.0.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Nov 4 12:34:47 2019 +0100] ], points at [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ] [info] Resolved tag [ dhp-1.0.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Nov 7 17:39:28 2019 +0100] ], points at [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ] [info] Resolved tag [ dhp-1.1.5 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Feb 13 18:11:32 2020 +0100] ], points at [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ] [info] Resolved tag [ dhp-1.1.6 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Mar 30 20:05:58 2020 +0200] ], points at [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ] [info] Resolved tag [ dhp-1.1.7 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri May 8 17:01:29 2020 +0200] ], points at [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ] [info] Resolved tag [ dhp-1.2.0 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 11 10:17:12 2020 +0200] ], points at [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ] [info] Resolved tag [ dhp-1.2.1 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 25 19:48:16 2020 +0200] ], points at [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ] [info] Resolved tag [ dhp-1.2.2 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri Jun 12 12:21:05 2020 +0200] ], points at [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ] [info] Resolved tag [ dhp-1.2.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Jun 22 11:27:41 2020 +0200] ], points at [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ] [info] Resolved tag [ dhp-1.2.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Apr 7 13:32:21 2022 +0200] ], points at [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ] [info] key [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ], tags => [ [DatedRevTag{id=cb5f978660ee4bc6f8d547caf7709a5736a3a24d, tagName='dhp-1.1.7', date=May 8, 2020 3:01:29 PM +00:00}] ] [info] key [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ], tags => [ [DatedRevTag{id=40bb2202a2df622928ce367d205d2a3c18ec4000, tagName='dhp-1.2.2', date=June 12, 2020 10:21:05 AM +00:00}] ] [info] key [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ], tags => [ [DatedRevTag{id=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1, tagName='dhp-1.0.4', date=November 7, 2019 4:39:28 PM +00:00}] ] [info] key [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ], tags => [ [DatedRevTag{id=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd, tagName='dhp-1.2.3', date=June 22, 2020 9:27:41 AM +00:00}] ] [info] key [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ], tags => [ [DatedRevTag{id=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10, tagName='dhp-1.1.6', date=March 30, 2020 6:05:58 PM +00:00}] ] [info] key [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ], tags => [ [DatedRevTag{id=85c96bd95517be30d93692630f29806f39c68b8c, tagName='dhp-1.2.0', date=May 11, 2020 8:17:12 AM +00:00}] ] [info] key [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ], tags => [ [DatedRevTag{id=d9fdf571c86cfdbd27e1153c587a1da7f2525e33, tagName='dhp-1.0.3', date=November 4, 2019 11:34:47 AM +00:00}] ] [info] key [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ], tags => [ [DatedRevTag{id=fdbee9aadd3ee119c777c94b53d762ece6352061, tagName='dhp-1.2.4', date=April 7, 2022 11:32:21 AM +00:00}] ] [info] key [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ], tags => [ [DatedRevTag{id=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570, tagName='dhp-1.1.5', date=February 13, 2020 5:11:32 PM +00:00}] ] [info] key [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ], tags => [ [DatedRevTag{id=2b632494536e76ba5b190d8bda8841e79b7a4704, tagName='dhp-1.2.1', date=May 25, 2020 5:48:16 PM +00:00}] ] [info] key [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ], tags => [ [DatedRevTag{id=26bd6211a3c51d2d2358b6cc72004808d8e318ce, tagName='1.0.1', date=October 31, 2019 10:47:41 AM +00:00}] ] [info] key [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ], tags => [ [DatedRevTag{id=fdf024d17efe96629fdcafc00888429233e8a42b, tagName='dhp-1.0.2', date=October 31, 2019 11:08:50 AM +00:00}] ] [info] Created map: [ {commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------=[dhp-1.1.7], commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------=[dhp-1.2.2], commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------=[dhp-1.0.4], commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------=[dhp-1.2.3], commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------=[dhp-1.1.6], commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------=[dhp-1.2.0], commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------=[dhp-1.0.3], commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------=[dhp-1.2.4], commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------=[dhp-1.1.5], commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------=[dhp-1.2.1], commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------=[1.0.1], commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------=[dhp-1.0.2]} ] [info] HEAD is [ 9c1df1507157c5fcbfa35842c67c8887b137dedc ] [info] Repo is in dirty state [ false ] [info] git.commit.id.describe dhp-1.2.4-345-g9c1df15 [info] git.commit.id 9c1df1507157c5fcbfa35842c67c8887b137dedc [info] git.commit.id.abbrev 9c1df15 [info] git.commit.user.name michele.artini [info] git.commit.user.email michele.artini@isti.cnr.it [info] git.commit.message.full null values in date range conditions [info] git.commit.message.short null values in date range conditions [info] git.commit.time 2023-02-13T15:05:58+0000 [info] git.remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop [info] git.tags [info] git.build.time 2023-03-23T15:11:34+0000 [info] git.commit.id.describe-short dhp-1.2.4-345 [info] found property git.tags [info] found property git.commit.id.abbrev [info] found property git.commit.user.email [info] found property git.commit.message.full [info] found property git.commit.id [info] found property git.commit.id.describe-short [info] found property git.commit.message.short [info] found property git.commit.user.name [info] found property git.build.user.name [info] found property git.commit.id.describe [info] found property git.build.user.email [info] found property git.branch [info] found property git.commit.time [info] found property git.build.time [info] found property git.remote.origin.url [info] Writing properties file to [ /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/version.properties ] (for module dhp-graph-mapper )... [info] dhp-graph-mapper ] project dhp-graph-mapper [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 15 Scala sources and 53 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/sx/graph/SparkCreateInputGraph.scala:113: abstract type T is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveEntities.scala:87: match may not be exhaustive. It would fail on the following inputs: datasource, organization, project [WARNING] two warnings found [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java:75: non-varargs call of varargs method with inexact argument type for last parameter; cast to java.lang.Object for a varargs call cast to java.lang.Object[] for a non-varargs call and to suppress this warning [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 69 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 69 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-mapper --- [INFO] Total Files Processed: 69 in 00:00.874 [INFO] Already Sorted: 69 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 91 resources [INFO] [INFO] --- maven-antrun-plugin:1.3:run (installer-copy-custom) @ dhp-graph-mapper --- [INFO] Executing tasks [unjar] Expanding: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/assembly-resources [INFO] Executed tasks [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 53 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 115 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 6 Scala sources and 16 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-mapper --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-mapper --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-dependency-plugin:3.0.0:copy-dependencies (copy dependencies) @ dhp-graph-mapper --- [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (attach-test-resources-package) @ dhp-graph-mapper --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- primer-maven-plugin:1.2.0:prime (priming) @ dhp-graph-mapper --- Downloading from ceon: https://maven.ceon.pl/artifactory/repo/log4j/log4j/maven-metadata.xml Downloading from dnet4-releases: http://maven.research-infrastructures.eu/nexus/content/repositories/dnet4-releases/log4j/log4j/maven-metadata.xml Downloading from iis-releases: https://maven.ceon.pl/artifactory/iis-releases/log4j/log4j/maven-metadata.xml Progress (1): 892 B Downloaded from ceon: https://maven.ceon.pl/artifactory/repo/log4j/log4j/maven-metadata.xml (892 B at 334 B/s) [INFO] Priming eu/dnetlib/dhp/sx/graph/finalGraph into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/primed [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-default-properties) @ dhp-graph-mapper --- [INFO] Loading classpath:project-default.properties [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-job-properties) @ dhp-graph-mapper --- [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:write-project-properties (write-job-properties) @ dhp-graph-mapper --- [INFO] Ignoring non-existent properties file '/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/primed/job.properties' [INFO] Ignoring non-existent properties file 'job-override.properties' [INFO] Creating /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/job.properties [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-assembly-plugin:3.0.0:single (assembly-oozie-installer) @ dhp-graph-mapper --- [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [INFO] Copying files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts [WARNING] Assembly file: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-antrun-plugin:1.3:run (default) @ dhp-graph-mapper --- [INFO] Executing tasks [copy] Copying 2 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app [mkdir] Created dir: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [copy] Copying 81 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [copy] Copying 1 file to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [tar] Building tar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package.tar.gz [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts [INFO] Executed tasks [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (create-target-dir) @ dhp-graph-mapper --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (upload-oozie-package) @ dhp-graph-mapper --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (extract-and-upload-to-hdfs) @ dhp-graph-mapper --- + '[' 0 = 0 ']' ++ pwd + target_dir_root=/home/git.dnet/oozie-packages/sx/graph/finalGraph/2023-03-23_15_11/oozie_app + hadoop fs -rm -r /user/git.dnet/sx/graph/finalGraph 23/03/23 15:12:28 INFO fs.TrashPolicyDefault: Moved: 'hdfs://nameservice1/user/git.dnet/sx/graph/finalGraph' to trash at: hdfs://nameservice1/user/git.dnet/.Trash/Current/user/git.dnet/sx/graph/finalGraph + hadoop fs -mkdir -p /user/git.dnet/sx/graph/finalGraph + hadoop fs -mkdir -p /user/git.dnet/sx/graph/finalGraph/working_dir + hadoop fs -put /home/git.dnet/oozie-packages/sx/graph/finalGraph/2023-03-23_15_11/oozie_app /user/git.dnet/sx/graph/finalGraph [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:25 min [INFO] Finished at: 2023-03-23T15:12:49Z [INFO] ------------------------------------------------------------------------ + ssh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl cd /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 && sh deploy_release.sh sx/graph/finalGraph /lib/dnet/PROD/scholix sx/graph/finalGraph + app_dir=sx/graph/finalGraph + hdfs_target_root_dir=/lib/dnet/PROD/scholix + app_target_dir=sx/graph/finalGraph ++ whoami + user_name=git.dnet + export HADOOP_USER_NAME=hdfs + HADOOP_USER_NAME=hdfs + hdfs_app_source_dir=/user/git.dnet/sx/graph/finalGraph/oozie_app + hdfs_target_dir=/lib/dnet/PROD/scholix/sx/graph/finalGraph + hdfs dfs -rm -r -f /lib/dnet/PROD/scholix/sx/graph/finalGraph + hdfs dfs -mkdir -p /lib/dnet/PROD/scholix/sx/graph/finalGraph + hdfs dfs -mv /user/git.dnet/sx/graph/finalGraph/oozie_app /lib/dnet/PROD/scholix/sx/graph/finalGraph [Pipeline] } $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 27939 killed; [ssh-agent] Stopped. [Pipeline] // sshagent [Pipeline] } [Pipeline] // withEnv [Pipeline] } Deleting 1 temporary files [Pipeline] // configFileProvider [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Scholexplorer_updateFinalGraphDatacite) [Pipeline] configFileProvider provisioning config files... copy managed file [dnet-hadoop-build.properties] to file:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config7251003792509361668tmp [Pipeline] { [Pipeline] load [Pipeline] { (/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config7251003792509361668tmp) [Pipeline] } [Pipeline] // load [Pipeline] tool [Pipeline] tool [Pipeline] withEnv [Pipeline] { [Pipeline] sshagent [ssh-agent] Using credentials git.dnet (User for CI/CD) [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-a8AJG12GE9pU/agent.28214 SSH_AGENT_PID=28216 Running ssh-add (command line suppressed) Identity added: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/private_key_1286902222674025754.key (git.dnet) [ssh-agent] Started. [Pipeline] { [Pipeline] sh + cd dnet-hadoop/dhp-workflows/dhp-aggregation + mvn clean package -Poozie-package,deploy -Dworkflow.source.dir=eu/dnetlib/dhp/sx/graph/datacite -DdhpConnectionProperties=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties -DskipTests -Dmaven.repo.local=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2 [INFO] Scanning for projects... [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-aggregation >------------------- [INFO] Building dhp-aggregation 1.2.5-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-aggregation --- [INFO] Deleting /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/.scalafmt.conf [INFO] Scalafmt results: 0 of 19 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:generate-properties (default) @ dhp-aggregation --- [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-connection-properties-file-existence) @ dhp-aggregation --- [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (reading-dhp-properties) @ dhp-aggregation --- [INFO] Loading /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties [INFO] [INFO] --- git-commit-id-plugin:2.1.11:revision (default) @ dhp-aggregation --- [info] dotGitDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.git [info] git.build.user.name null [info] git.build.user.email null [info] Using environment variable based branch name. GIT_BRANCH = origin/scholexplorer_cleaning [info] git.branch origin/scholexplorer_cleaning [info] Tag refs [ [Ref[refs/tags/1.0.1=26bd6211a3c51d2d2358b6cc72004808d8e318ce], Ref[refs/tags/archive/bipFinder_master_test=d6686dd7cf7b73d5efa8b333aca59c54e83fcf0a], Ref[refs/tags/archive/dedupTest=36f8f2ea66412f909cd8983cc0718b0ab6e10641], Ref[refs/tags/archive/islookup_timeout=2c4196ab22872046d6d7ae994d70a5dc57e47e19], Ref[refs/tags/archive/junit5=9dff4adbc3d4bbc2d1a4587f5424d7b7190ace4d], Ref[refs/tags/archive/master_pre_stable_ids=ef612105ba883c9a4b12a35f62eec420185db0ef], Ref[refs/tags/dhp-1.0.2=fdf024d17efe96629fdcafc00888429233e8a42b], Ref[refs/tags/dhp-1.0.3=d9fdf571c86cfdbd27e1153c587a1da7f2525e33], Ref[refs/tags/dhp-1.0.4=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1], Ref[refs/tags/dhp-1.1.5=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570], Ref[refs/tags/dhp-1.1.6=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10], Ref[refs/tags/dhp-1.1.7=cb5f978660ee4bc6f8d547caf7709a5736a3a24d], Ref[refs/tags/dhp-1.2.0=85c96bd95517be30d93692630f29806f39c68b8c], Ref[refs/tags/dhp-1.2.1=2b632494536e76ba5b190d8bda8841e79b7a4704], Ref[refs/tags/dhp-1.2.2=40bb2202a2df622928ce367d205d2a3c18ec4000], Ref[refs/tags/dhp-1.2.3=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd], Ref[refs/tags/dhp-1.2.4=fdbee9aadd3ee119c777c94b53d762ece6352061]] ] [info] Resolved tag [ 1.0.1 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 11:47:41 2019 +0100] ], points at [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ] [info] Resolved tag [ dhp-1.0.2 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 12:08:50 2019 +0100] ], points at [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ] [info] Resolved tag [ dhp-1.0.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Nov 4 12:34:47 2019 +0100] ], points at [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ] [info] Resolved tag [ dhp-1.0.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Nov 7 17:39:28 2019 +0100] ], points at [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ] [info] Resolved tag [ dhp-1.1.5 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Feb 13 18:11:32 2020 +0100] ], points at [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ] [info] Resolved tag [ dhp-1.1.6 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Mar 30 20:05:58 2020 +0200] ], points at [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ] [info] Resolved tag [ dhp-1.1.7 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri May 8 17:01:29 2020 +0200] ], points at [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ] [info] Resolved tag [ dhp-1.2.0 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 11 10:17:12 2020 +0200] ], points at [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ] [info] Resolved tag [ dhp-1.2.1 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 25 19:48:16 2020 +0200] ], points at [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ] [info] Resolved tag [ dhp-1.2.2 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri Jun 12 12:21:05 2020 +0200] ], points at [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ] [info] Resolved tag [ dhp-1.2.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Jun 22 11:27:41 2020 +0200] ], points at [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ] [info] Resolved tag [ dhp-1.2.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Apr 7 13:32:21 2022 +0200] ], points at [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ] [info] key [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ], tags => [ [DatedRevTag{id=cb5f978660ee4bc6f8d547caf7709a5736a3a24d, tagName='dhp-1.1.7', date=May 8, 2020 3:01:29 PM +00:00}] ] [info] key [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ], tags => [ [DatedRevTag{id=40bb2202a2df622928ce367d205d2a3c18ec4000, tagName='dhp-1.2.2', date=June 12, 2020 10:21:05 AM +00:00}] ] [info] key [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ], tags => [ [DatedRevTag{id=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1, tagName='dhp-1.0.4', date=November 7, 2019 4:39:28 PM +00:00}] ] [info] key [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ], tags => [ [DatedRevTag{id=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd, tagName='dhp-1.2.3', date=June 22, 2020 9:27:41 AM +00:00}] ] [info] key [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ], tags => [ [DatedRevTag{id=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10, tagName='dhp-1.1.6', date=March 30, 2020 6:05:58 PM +00:00}] ] [info] key [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ], tags => [ [DatedRevTag{id=85c96bd95517be30d93692630f29806f39c68b8c, tagName='dhp-1.2.0', date=May 11, 2020 8:17:12 AM +00:00}] ] [info] key [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ], tags => [ [DatedRevTag{id=d9fdf571c86cfdbd27e1153c587a1da7f2525e33, tagName='dhp-1.0.3', date=November 4, 2019 11:34:47 AM +00:00}] ] [info] key [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ], tags => [ [DatedRevTag{id=fdbee9aadd3ee119c777c94b53d762ece6352061, tagName='dhp-1.2.4', date=April 7, 2022 11:32:21 AM +00:00}] ] [info] key [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ], tags => [ [DatedRevTag{id=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570, tagName='dhp-1.1.5', date=February 13, 2020 5:11:32 PM +00:00}] ] [info] key [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ], tags => [ [DatedRevTag{id=2b632494536e76ba5b190d8bda8841e79b7a4704, tagName='dhp-1.2.1', date=May 25, 2020 5:48:16 PM +00:00}] ] [info] key [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ], tags => [ [DatedRevTag{id=26bd6211a3c51d2d2358b6cc72004808d8e318ce, tagName='1.0.1', date=October 31, 2019 10:47:41 AM +00:00}] ] [info] key [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ], tags => [ [DatedRevTag{id=fdf024d17efe96629fdcafc00888429233e8a42b, tagName='dhp-1.0.2', date=October 31, 2019 11:08:50 AM +00:00}] ] [info] Created map: [ {commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------=[dhp-1.1.7], commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------=[dhp-1.2.2], commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------=[dhp-1.0.4], commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------=[dhp-1.2.3], commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------=[dhp-1.1.6], commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------=[dhp-1.2.0], commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------=[dhp-1.0.3], commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------=[dhp-1.2.4], commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------=[dhp-1.1.5], commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------=[dhp-1.2.1], commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------=[1.0.1], commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------=[dhp-1.0.2]} ] [info] HEAD is [ 9c1df1507157c5fcbfa35842c67c8887b137dedc ] [info] Repo is in dirty state [ false ] [info] git.commit.id.describe dhp-1.2.4-345-g9c1df15 [info] git.commit.id 9c1df1507157c5fcbfa35842c67c8887b137dedc [info] git.commit.id.abbrev 9c1df15 [info] git.commit.user.name michele.artini [info] git.commit.user.email michele.artini@isti.cnr.it [info] git.commit.message.full null values in date range conditions [info] git.commit.message.short null values in date range conditions [info] git.commit.time 2023-02-13T15:05:58+0000 [info] git.remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop [info] git.tags [info] git.build.time 2023-03-23T15:13:11+0000 [info] git.commit.id.describe-short dhp-1.2.4-345 [info] found property git.tags [info] found property git.commit.id.abbrev [info] found property git.commit.user.email [info] found property git.commit.message.full [info] found property git.commit.id [info] found property git.commit.id.describe-short [info] found property git.commit.message.short [info] found property git.commit.user.name [info] found property git.build.user.name [info] found property git.commit.id.describe [info] found property git.build.user.email [info] found property git.branch [info] found property git.commit.time [info] found property git.build.time [info] found property git.remote.origin.url [info] Writing properties file to [ /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app/version.properties ] (for module dhp-aggregation )... [info] dhp-aggregation ] project dhp-aggregation [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 16 Scala sources and 79 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/classes ... [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipfinder/SparkAtomicActionScoreJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipfinder/SparkAtomicActionScoreJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 101 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 101 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 101 in 00:01.059 [INFO] Already Sorted: 101 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 65 resources [INFO] [INFO] --- maven-antrun-plugin:1.3:run (installer-copy-custom) @ dhp-aggregation --- [INFO] Executing tasks [unjar] Expanding: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/assembly-resources [INFO] Executed tasks [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-aggregation >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/.scalafmt.conf [INFO] Scalafmt results: 0 of 19 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:generate-properties (default) @ dhp-aggregation --- [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-connection-properties-file-existence) @ dhp-aggregation --- [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (reading-dhp-properties) @ dhp-aggregation --- [INFO] Loading /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties [INFO] [INFO] --- git-commit-id-plugin:2.1.11:revision (default) @ dhp-aggregation --- [info] dotGitDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.git [info] git.build.user.name null [info] git.build.user.email null [info] Using environment variable based branch name. GIT_BRANCH = origin/scholexplorer_cleaning [info] git.branch origin/scholexplorer_cleaning [info] Tag refs [ [Ref[refs/tags/1.0.1=26bd6211a3c51d2d2358b6cc72004808d8e318ce], Ref[refs/tags/archive/bipFinder_master_test=d6686dd7cf7b73d5efa8b333aca59c54e83fcf0a], Ref[refs/tags/archive/dedupTest=36f8f2ea66412f909cd8983cc0718b0ab6e10641], Ref[refs/tags/archive/islookup_timeout=2c4196ab22872046d6d7ae994d70a5dc57e47e19], Ref[refs/tags/archive/junit5=9dff4adbc3d4bbc2d1a4587f5424d7b7190ace4d], Ref[refs/tags/archive/master_pre_stable_ids=ef612105ba883c9a4b12a35f62eec420185db0ef], Ref[refs/tags/dhp-1.0.2=fdf024d17efe96629fdcafc00888429233e8a42b], Ref[refs/tags/dhp-1.0.3=d9fdf571c86cfdbd27e1153c587a1da7f2525e33], Ref[refs/tags/dhp-1.0.4=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1], Ref[refs/tags/dhp-1.1.5=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570], Ref[refs/tags/dhp-1.1.6=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10], Ref[refs/tags/dhp-1.1.7=cb5f978660ee4bc6f8d547caf7709a5736a3a24d], Ref[refs/tags/dhp-1.2.0=85c96bd95517be30d93692630f29806f39c68b8c], Ref[refs/tags/dhp-1.2.1=2b632494536e76ba5b190d8bda8841e79b7a4704], Ref[refs/tags/dhp-1.2.2=40bb2202a2df622928ce367d205d2a3c18ec4000], Ref[refs/tags/dhp-1.2.3=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd], Ref[refs/tags/dhp-1.2.4=fdbee9aadd3ee119c777c94b53d762ece6352061]] ] [info] Resolved tag [ 1.0.1 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 11:47:41 2019 +0100] ], points at [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ] [info] Resolved tag [ dhp-1.0.2 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 12:08:50 2019 +0100] ], points at [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ] [info] Resolved tag [ dhp-1.0.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Nov 4 12:34:47 2019 +0100] ], points at [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ] [info] Resolved tag [ dhp-1.0.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Nov 7 17:39:28 2019 +0100] ], points at [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ] [info] Resolved tag [ dhp-1.1.5 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Feb 13 18:11:32 2020 +0100] ], points at [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ] [info] Resolved tag [ dhp-1.1.6 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Mar 30 20:05:58 2020 +0200] ], points at [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ] [info] Resolved tag [ dhp-1.1.7 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri May 8 17:01:29 2020 +0200] ], points at [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ] [info] Resolved tag [ dhp-1.2.0 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 11 10:17:12 2020 +0200] ], points at [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ] [info] Resolved tag [ dhp-1.2.1 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 25 19:48:16 2020 +0200] ], points at [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ] [info] Resolved tag [ dhp-1.2.2 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri Jun 12 12:21:05 2020 +0200] ], points at [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ] [info] Resolved tag [ dhp-1.2.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Jun 22 11:27:41 2020 +0200] ], points at [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ] [info] Resolved tag [ dhp-1.2.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Apr 7 13:32:21 2022 +0200] ], points at [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ] [info] key [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ], tags => [ [DatedRevTag{id=cb5f978660ee4bc6f8d547caf7709a5736a3a24d, tagName='dhp-1.1.7', date=May 8, 2020 3:01:29 PM +00:00}] ] [info] key [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ], tags => [ [DatedRevTag{id=40bb2202a2df622928ce367d205d2a3c18ec4000, tagName='dhp-1.2.2', date=June 12, 2020 10:21:05 AM +00:00}] ] [info] key [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ], tags => [ [DatedRevTag{id=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1, tagName='dhp-1.0.4', date=November 7, 2019 4:39:28 PM +00:00}] ] [info] key [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ], tags => [ [DatedRevTag{id=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd, tagName='dhp-1.2.3', date=June 22, 2020 9:27:41 AM +00:00}] ] [info] key [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ], tags => [ [DatedRevTag{id=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10, tagName='dhp-1.1.6', date=March 30, 2020 6:05:58 PM +00:00}] ] [info] key [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ], tags => [ [DatedRevTag{id=85c96bd95517be30d93692630f29806f39c68b8c, tagName='dhp-1.2.0', date=May 11, 2020 8:17:12 AM +00:00}] ] [info] key [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ], tags => [ [DatedRevTag{id=d9fdf571c86cfdbd27e1153c587a1da7f2525e33, tagName='dhp-1.0.3', date=November 4, 2019 11:34:47 AM +00:00}] ] [info] key [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ], tags => [ [DatedRevTag{id=fdbee9aadd3ee119c777c94b53d762ece6352061, tagName='dhp-1.2.4', date=April 7, 2022 11:32:21 AM +00:00}] ] [info] key [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ], tags => [ [DatedRevTag{id=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570, tagName='dhp-1.1.5', date=February 13, 2020 5:11:32 PM +00:00}] ] [info] key [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ], tags => [ [DatedRevTag{id=2b632494536e76ba5b190d8bda8841e79b7a4704, tagName='dhp-1.2.1', date=May 25, 2020 5:48:16 PM +00:00}] ] [info] key [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ], tags => [ [DatedRevTag{id=26bd6211a3c51d2d2358b6cc72004808d8e318ce, tagName='1.0.1', date=October 31, 2019 10:47:41 AM +00:00}] ] [info] key [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ], tags => [ [DatedRevTag{id=fdf024d17efe96629fdcafc00888429233e8a42b, tagName='dhp-1.0.2', date=October 31, 2019 11:08:50 AM +00:00}] ] [info] Created map: [ {commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------=[dhp-1.1.7], commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------=[dhp-1.2.2], commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------=[dhp-1.0.4], commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------=[dhp-1.2.3], commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------=[dhp-1.1.6], commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------=[dhp-1.2.0], commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------=[dhp-1.0.3], commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------=[dhp-1.2.4], commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------=[dhp-1.1.5], commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------=[dhp-1.2.1], commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------=[1.0.1], commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------=[dhp-1.0.2]} ] [info] HEAD is [ 9c1df1507157c5fcbfa35842c67c8887b137dedc ] [info] Repo is in dirty state [ false ] [info] git.commit.id.describe dhp-1.2.4-345-g9c1df15 [info] git.commit.id 9c1df1507157c5fcbfa35842c67c8887b137dedc [info] git.commit.id.abbrev 9c1df15 [info] git.commit.user.name michele.artini [info] git.commit.user.email michele.artini@isti.cnr.it [info] git.commit.message.full null values in date range conditions [info] git.commit.message.short null values in date range conditions [info] git.commit.time 2023-02-13T15:05:58+0000 [info] git.remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop [info] git.tags [info] git.build.time 2023-03-23T15:13:46+0000 [info] git.commit.id.describe-short dhp-1.2.4-345 [info] found property git.tags [info] found property git.commit.id.abbrev [info] found property git.commit.user.email [info] found property git.commit.message.full [info] found property git.commit.id [info] found property git.commit.id.describe-short [info] found property git.commit.message.short [info] found property git.commit.user.name [info] found property git.build.user.name [info] found property git.commit.id.describe [info] found property git.build.user.email [info] found property git.branch [info] found property git.commit.time [info] found property git.build.time [info] found property git.remote.origin.url [info] Writing properties file to [ /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app/version.properties ] (for module dhp-aggregation )... [info] dhp-aggregation ] project dhp-aggregation [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 101 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 101 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 101 in 00:00.322 [INFO] Already Sorted: 101 [INFO] Needed Sorting: 0 [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-aggregation <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-aggregation --- model contains 149 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 79 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionUsageJob.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionUsageJob.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 79 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 22 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/test-classes ... [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 22 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-aggregation --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-aggregation --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-dependency-plugin:3.0.0:copy-dependencies (copy dependencies) @ dhp-aggregation --- [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (attach-test-resources-package) @ dhp-aggregation --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- primer-maven-plugin:1.2.0:prime (priming) @ dhp-aggregation --- [INFO] Priming eu/dnetlib/dhp/sx/graph/datacite into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/primed [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-default-properties) @ dhp-aggregation --- [INFO] Loading classpath:project-default.properties [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-job-properties) @ dhp-aggregation --- [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:write-project-properties (write-job-properties) @ dhp-aggregation --- [INFO] Ignoring non-existent properties file '/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/primed/job.properties' [INFO] Ignoring non-existent properties file 'job-override.properties' [INFO] Creating /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/job.properties [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-aggregation --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-assembly-plugin:3.0.0:single (assembly-oozie-installer) @ dhp-aggregation --- [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [INFO] Copying files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package_shell_scripts [WARNING] Assembly file: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package_shell_scripts is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-antrun-plugin:1.3:run (default) @ dhp-aggregation --- [INFO] Executing tasks [copy] Copying 2 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app [mkdir] Created dir: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app/lib [copy] Copying 81 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app/lib [copy] Copying 1 file to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package/oozie_app/lib [tar] Building tar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package.tar.gz [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-aggregation/target/oozie-package_shell_scripts [INFO] Executed tasks [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (create-target-dir) @ dhp-aggregation --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (upload-oozie-package) @ dhp-aggregation --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (extract-and-upload-to-hdfs) @ dhp-aggregation --- + '[' 0 = 0 ']' ++ pwd + target_dir_root=/home/git.dnet/oozie-packages/sx/graph/datacite/2023-03-23_15_13/oozie_app + hadoop fs -rm -r /user/git.dnet/sx/graph/datacite 23/03/23 15:14:26 INFO fs.TrashPolicyDefault: Moved: 'hdfs://nameservice1/user/git.dnet/sx/graph/datacite' to trash at: hdfs://nameservice1/user/git.dnet/.Trash/Current/user/git.dnet/sx/graph/datacite + hadoop fs -mkdir -p /user/git.dnet/sx/graph/datacite + hadoop fs -mkdir -p /user/git.dnet/sx/graph/datacite/working_dir + hadoop fs -put /home/git.dnet/oozie-packages/sx/graph/datacite/2023-03-23_15_13/oozie_app /user/git.dnet/sx/graph/datacite [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:47 min [INFO] Finished at: 2023-03-23T15:14:47Z [INFO] ------------------------------------------------------------------------ + ssh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl cd /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 && sh deploy_release.sh sx/graph/datacite /lib/dnet/PROD/scholix sx/graph/update_graph + app_dir=sx/graph/datacite + hdfs_target_root_dir=/lib/dnet/PROD/scholix + app_target_dir=sx/graph/update_graph ++ whoami + user_name=git.dnet + export HADOOP_USER_NAME=hdfs + HADOOP_USER_NAME=hdfs + hdfs_app_source_dir=/user/git.dnet/sx/graph/datacite/oozie_app + hdfs_target_dir=/lib/dnet/PROD/scholix/sx/graph/update_graph + hdfs dfs -rm -r -f /lib/dnet/PROD/scholix/sx/graph/update_graph + hdfs dfs -mkdir -p /lib/dnet/PROD/scholix/sx/graph/update_graph + hdfs dfs -mv /user/git.dnet/sx/graph/datacite/oozie_app /lib/dnet/PROD/scholix/sx/graph/update_graph [Pipeline] } $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 28216 killed; [ssh-agent] Stopped. [Pipeline] // sshagent [Pipeline] } [Pipeline] // withEnv [Pipeline] } Deleting 1 temporary files [Pipeline] // configFileProvider [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Scholexplorer_serializeGraph) [Pipeline] configFileProvider provisioning config files... copy managed file [dnet-hadoop-build.properties] to file:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config5741511770688555876tmp [Pipeline] { [Pipeline] load [Pipeline] { (/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config5741511770688555876tmp) [Pipeline] } [Pipeline] // load [Pipeline] tool [Pipeline] tool [Pipeline] withEnv [Pipeline] { [Pipeline] sshagent [ssh-agent] Using credentials git.dnet (User for CI/CD) [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-TPmT731syNSV/agent.28467 SSH_AGENT_PID=28469 Running ssh-add (command line suppressed) Identity added: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/private_key_3349212986205494265.key (git.dnet) [ssh-agent] Started. [Pipeline] { [Pipeline] sh + cd dnet-hadoop/dhp-workflows/dhp-graph-mapper + mvn clean package -Poozie-package,deploy -Dworkflow.source.dir=eu/dnetlib/dhp/sx/graph/serializeGraph -DdhpConnectionProperties=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties -DskipTests -Dmaven.repo.local=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2 [INFO] Scanning for projects... [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-graph-mapper >------------------- [INFO] Building dhp-graph-mapper 1.2.5-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-mapper --- [INFO] Deleting /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:generate-properties (default) @ dhp-graph-mapper --- [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-connection-properties-file-existence) @ dhp-graph-mapper --- [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (reading-dhp-properties) @ dhp-graph-mapper --- [INFO] Loading /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties [INFO] [INFO] --- git-commit-id-plugin:2.1.11:revision (default) @ dhp-graph-mapper --- [info] dotGitDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.git [info] git.build.user.name null [info] git.build.user.email null [info] Using environment variable based branch name. GIT_BRANCH = origin/scholexplorer_cleaning [info] git.branch origin/scholexplorer_cleaning [info] Tag refs [ [Ref[refs/tags/1.0.1=26bd6211a3c51d2d2358b6cc72004808d8e318ce], Ref[refs/tags/archive/bipFinder_master_test=d6686dd7cf7b73d5efa8b333aca59c54e83fcf0a], Ref[refs/tags/archive/dedupTest=36f8f2ea66412f909cd8983cc0718b0ab6e10641], Ref[refs/tags/archive/islookup_timeout=2c4196ab22872046d6d7ae994d70a5dc57e47e19], Ref[refs/tags/archive/junit5=9dff4adbc3d4bbc2d1a4587f5424d7b7190ace4d], Ref[refs/tags/archive/master_pre_stable_ids=ef612105ba883c9a4b12a35f62eec420185db0ef], Ref[refs/tags/dhp-1.0.2=fdf024d17efe96629fdcafc00888429233e8a42b], Ref[refs/tags/dhp-1.0.3=d9fdf571c86cfdbd27e1153c587a1da7f2525e33], Ref[refs/tags/dhp-1.0.4=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1], Ref[refs/tags/dhp-1.1.5=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570], Ref[refs/tags/dhp-1.1.6=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10], Ref[refs/tags/dhp-1.1.7=cb5f978660ee4bc6f8d547caf7709a5736a3a24d], Ref[refs/tags/dhp-1.2.0=85c96bd95517be30d93692630f29806f39c68b8c], Ref[refs/tags/dhp-1.2.1=2b632494536e76ba5b190d8bda8841e79b7a4704], Ref[refs/tags/dhp-1.2.2=40bb2202a2df622928ce367d205d2a3c18ec4000], Ref[refs/tags/dhp-1.2.3=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd], Ref[refs/tags/dhp-1.2.4=fdbee9aadd3ee119c777c94b53d762ece6352061]] ] [info] Resolved tag [ 1.0.1 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 11:47:41 2019 +0100] ], points at [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ] [info] Resolved tag [ dhp-1.0.2 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 12:08:50 2019 +0100] ], points at [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ] [info] Resolved tag [ dhp-1.0.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Nov 4 12:34:47 2019 +0100] ], points at [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ] [info] Resolved tag [ dhp-1.0.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Nov 7 17:39:28 2019 +0100] ], points at [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ] [info] Resolved tag [ dhp-1.1.5 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Feb 13 18:11:32 2020 +0100] ], points at [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ] [info] Resolved tag [ dhp-1.1.6 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Mar 30 20:05:58 2020 +0200] ], points at [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ] [info] Resolved tag [ dhp-1.1.7 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri May 8 17:01:29 2020 +0200] ], points at [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ] [info] Resolved tag [ dhp-1.2.0 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 11 10:17:12 2020 +0200] ], points at [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ] [info] Resolved tag [ dhp-1.2.1 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 25 19:48:16 2020 +0200] ], points at [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ] [info] Resolved tag [ dhp-1.2.2 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri Jun 12 12:21:05 2020 +0200] ], points at [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ] [info] Resolved tag [ dhp-1.2.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Jun 22 11:27:41 2020 +0200] ], points at [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ] [info] Resolved tag [ dhp-1.2.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Apr 7 13:32:21 2022 +0200] ], points at [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ] [info] key [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ], tags => [ [DatedRevTag{id=cb5f978660ee4bc6f8d547caf7709a5736a3a24d, tagName='dhp-1.1.7', date=May 8, 2020 3:01:29 PM +00:00}] ] [info] key [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ], tags => [ [DatedRevTag{id=40bb2202a2df622928ce367d205d2a3c18ec4000, tagName='dhp-1.2.2', date=June 12, 2020 10:21:05 AM +00:00}] ] [info] key [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ], tags => [ [DatedRevTag{id=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1, tagName='dhp-1.0.4', date=November 7, 2019 4:39:28 PM +00:00}] ] [info] key [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ], tags => [ [DatedRevTag{id=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd, tagName='dhp-1.2.3', date=June 22, 2020 9:27:41 AM +00:00}] ] [info] key [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ], tags => [ [DatedRevTag{id=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10, tagName='dhp-1.1.6', date=March 30, 2020 6:05:58 PM +00:00}] ] [info] key [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ], tags => [ [DatedRevTag{id=85c96bd95517be30d93692630f29806f39c68b8c, tagName='dhp-1.2.0', date=May 11, 2020 8:17:12 AM +00:00}] ] [info] key [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ], tags => [ [DatedRevTag{id=d9fdf571c86cfdbd27e1153c587a1da7f2525e33, tagName='dhp-1.0.3', date=November 4, 2019 11:34:47 AM +00:00}] ] [info] key [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ], tags => [ [DatedRevTag{id=fdbee9aadd3ee119c777c94b53d762ece6352061, tagName='dhp-1.2.4', date=April 7, 2022 11:32:21 AM +00:00}] ] [info] key [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ], tags => [ [DatedRevTag{id=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570, tagName='dhp-1.1.5', date=February 13, 2020 5:11:32 PM +00:00}] ] [info] key [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ], tags => [ [DatedRevTag{id=2b632494536e76ba5b190d8bda8841e79b7a4704, tagName='dhp-1.2.1', date=May 25, 2020 5:48:16 PM +00:00}] ] [info] key [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ], tags => [ [DatedRevTag{id=26bd6211a3c51d2d2358b6cc72004808d8e318ce, tagName='1.0.1', date=October 31, 2019 10:47:41 AM +00:00}] ] [info] key [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ], tags => [ [DatedRevTag{id=fdf024d17efe96629fdcafc00888429233e8a42b, tagName='dhp-1.0.2', date=October 31, 2019 11:08:50 AM +00:00}] ] [info] Created map: [ {commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------=[dhp-1.1.7], commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------=[dhp-1.2.2], commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------=[dhp-1.0.4], commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------=[dhp-1.2.3], commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------=[dhp-1.1.6], commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------=[dhp-1.2.0], commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------=[dhp-1.0.3], commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------=[dhp-1.2.4], commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------=[dhp-1.1.5], commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------=[dhp-1.2.1], commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------=[1.0.1], commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------=[dhp-1.0.2]} ] [info] HEAD is [ 9c1df1507157c5fcbfa35842c67c8887b137dedc ] [info] Repo is in dirty state [ false ] [info] git.commit.id.describe dhp-1.2.4-345-g9c1df15 [info] git.commit.id 9c1df1507157c5fcbfa35842c67c8887b137dedc [info] git.commit.id.abbrev 9c1df15 [info] git.commit.user.name michele.artini [info] git.commit.user.email michele.artini@isti.cnr.it [info] git.commit.message.full null values in date range conditions [info] git.commit.message.short null values in date range conditions [info] git.commit.time 2023-02-13T15:05:58+0000 [info] git.remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop [info] git.tags [info] git.build.time 2023-03-23T15:15:09+0000 [info] git.commit.id.describe-short dhp-1.2.4-345 [info] found property git.tags [info] found property git.commit.id.abbrev [info] found property git.commit.user.email [info] found property git.commit.message.full [info] found property git.commit.id [info] found property git.commit.id.describe-short [info] found property git.commit.message.short [info] found property git.commit.user.name [info] found property git.build.user.name [info] found property git.commit.id.describe [info] found property git.build.user.email [info] found property git.branch [info] found property git.commit.time [info] found property git.build.time [info] found property git.remote.origin.url [info] Writing properties file to [ /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/version.properties ] (for module dhp-graph-mapper )... [info] dhp-graph-mapper ] project dhp-graph-mapper [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 15 Scala sources and 53 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/sx/graph/SparkCreateInputGraph.scala:113: abstract type T is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveEntities.scala:87: match may not be exhaustive. It would fail on the following inputs: datasource, organization, project [WARNING] two warnings found [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java:75: non-varargs call of varargs method with inexact argument type for last parameter; cast to java.lang.Object for a varargs call cast to java.lang.Object[] for a non-varargs call and to suppress this warning [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanContextSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 69 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 69 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-mapper --- [INFO] Total Files Processed: 69 in 00:00.966 [INFO] Already Sorted: 69 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 91 resources [INFO] [INFO] --- maven-antrun-plugin:1.3:run (installer-copy-custom) @ dhp-graph-mapper --- [INFO] Executing tasks [unjar] Expanding: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/assembly-resources [INFO] Executed tasks [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 53 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 115 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 6 Scala sources and 16 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-mapper --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-mapper --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-dependency-plugin:3.0.0:copy-dependencies (copy dependencies) @ dhp-graph-mapper --- [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (attach-test-resources-package) @ dhp-graph-mapper --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- primer-maven-plugin:1.2.0:prime (priming) @ dhp-graph-mapper --- [INFO] Priming eu/dnetlib/dhp/sx/graph/serializeGraph into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/primed [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-default-properties) @ dhp-graph-mapper --- [INFO] Loading classpath:project-default.properties [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-job-properties) @ dhp-graph-mapper --- [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:write-project-properties (write-job-properties) @ dhp-graph-mapper --- [INFO] Ignoring non-existent properties file '/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/primed/job.properties' [INFO] Ignoring non-existent properties file 'job-override.properties' [INFO] Creating /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/job.properties [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-assembly-plugin:3.0.0:single (assembly-oozie-installer) @ dhp-graph-mapper --- [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [INFO] Copying files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts [WARNING] Assembly file: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-antrun-plugin:1.3:run (default) @ dhp-graph-mapper --- [INFO] Executing tasks [copy] Copying 2 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app [mkdir] Created dir: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [copy] Copying 81 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [copy] Copying 1 file to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package/oozie_app/lib [tar] Building tar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package.tar.gz [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-mapper/target/oozie-package_shell_scripts [INFO] Executed tasks [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (create-target-dir) @ dhp-graph-mapper --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (upload-oozie-package) @ dhp-graph-mapper --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (extract-and-upload-to-hdfs) @ dhp-graph-mapper --- + '[' 0 = 0 ']' ++ pwd + target_dir_root=/home/git.dnet/oozie-packages/sx/graph/serializeGraph/2023-03-23_15_14/oozie_app + hadoop fs -rm -r /user/git.dnet/sx/graph/serializeGraph 23/03/23 15:16:02 INFO fs.TrashPolicyDefault: Moved: 'hdfs://nameservice1/user/git.dnet/sx/graph/serializeGraph' to trash at: hdfs://nameservice1/user/git.dnet/.Trash/Current/user/git.dnet/sx/graph/serializeGraph + hadoop fs -mkdir -p /user/git.dnet/sx/graph/serializeGraph + hadoop fs -mkdir -p /user/git.dnet/sx/graph/serializeGraph/working_dir + hadoop fs -put /home/git.dnet/oozie-packages/sx/graph/serializeGraph/2023-03-23_15_14/oozie_app /user/git.dnet/sx/graph/serializeGraph [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:29 min [INFO] Finished at: 2023-03-23T15:16:26Z [INFO] ------------------------------------------------------------------------ + ssh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl cd /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 && sh deploy_release.sh sx/graph/serializeGraph /lib/dnet/PROD/scholix sx/graph/serializeGraph + app_dir=sx/graph/serializeGraph + hdfs_target_root_dir=/lib/dnet/PROD/scholix + app_target_dir=sx/graph/serializeGraph ++ whoami + user_name=git.dnet + export HADOOP_USER_NAME=hdfs + HADOOP_USER_NAME=hdfs + hdfs_app_source_dir=/user/git.dnet/sx/graph/serializeGraph/oozie_app + hdfs_target_dir=/lib/dnet/PROD/scholix/sx/graph/serializeGraph + hdfs dfs -rm -r -f /lib/dnet/PROD/scholix/sx/graph/serializeGraph + hdfs dfs -mkdir -p /lib/dnet/PROD/scholix/sx/graph/serializeGraph + hdfs dfs -mv /user/git.dnet/sx/graph/serializeGraph/oozie_app /lib/dnet/PROD/scholix/sx/graph/serializeGraph [Pipeline] } $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 28469 killed; [ssh-agent] Stopped. [Pipeline] // sshagent [Pipeline] } [Pipeline] // withEnv [Pipeline] } Deleting 1 temporary files [Pipeline] // configFileProvider [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (indexScholexplorer) [Pipeline] configFileProvider provisioning config files... copy managed file [dnet-hadoop-build.properties] to file:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config1731763057513744975tmp [Pipeline] { [Pipeline] load [Pipeline] { (/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/config1731763057513744975tmp) [Pipeline] } [Pipeline] // load [Pipeline] tool [Pipeline] tool [Pipeline] withEnv [Pipeline] { [Pipeline] sshagent [ssh-agent] Using credentials git.dnet (User for CI/CD) [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-VAlmv53SHWO8/agent.28675 SSH_AGENT_PID=28677 Running ssh-add (command line suppressed) Identity added: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/private_key_3972551721108052517.key (git.dnet) [ssh-agent] Started. [Pipeline] { [Pipeline] sh + cd dnet-hadoop/dhp-workflows/dhp-graph-provision + mvn clean package -Poozie-package,deploy -Dworkflow.source.dir=eu/dnetlib/dhp/sx/provision -DdhpConnectionProperties=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties -DskipTests -Dmaven.repo.local=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2 [INFO] Scanning for projects... [INFO] [INFO] -----------------< eu.dnetlib.dhp:dhp-graph-provision >----------------- [INFO] Building dhp-graph-provision 1.2.5-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-provision --- [INFO] Deleting /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-provision --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:generate-properties (default) @ dhp-graph-provision --- [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-provision --- [INFO] argLine set to -javaagent:/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-connection-properties-file-existence) @ dhp-graph-provision --- [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (reading-dhp-properties) @ dhp-graph-provision --- [INFO] Loading /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/connection-properties/iis-cdh5-test-gw.properties [INFO] [INFO] --- git-commit-id-plugin:2.1.11:revision (default) @ dhp-graph-provision --- [info] dotGitDirectory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/.git [info] git.build.user.name null [info] git.build.user.email null [info] Using environment variable based branch name. GIT_BRANCH = origin/scholexplorer_cleaning [info] git.branch origin/scholexplorer_cleaning [info] Tag refs [ [Ref[refs/tags/1.0.1=26bd6211a3c51d2d2358b6cc72004808d8e318ce], Ref[refs/tags/archive/bipFinder_master_test=d6686dd7cf7b73d5efa8b333aca59c54e83fcf0a], Ref[refs/tags/archive/dedupTest=36f8f2ea66412f909cd8983cc0718b0ab6e10641], Ref[refs/tags/archive/islookup_timeout=2c4196ab22872046d6d7ae994d70a5dc57e47e19], Ref[refs/tags/archive/junit5=9dff4adbc3d4bbc2d1a4587f5424d7b7190ace4d], Ref[refs/tags/archive/master_pre_stable_ids=ef612105ba883c9a4b12a35f62eec420185db0ef], Ref[refs/tags/dhp-1.0.2=fdf024d17efe96629fdcafc00888429233e8a42b], Ref[refs/tags/dhp-1.0.3=d9fdf571c86cfdbd27e1153c587a1da7f2525e33], Ref[refs/tags/dhp-1.0.4=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1], Ref[refs/tags/dhp-1.1.5=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570], Ref[refs/tags/dhp-1.1.6=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10], Ref[refs/tags/dhp-1.1.7=cb5f978660ee4bc6f8d547caf7709a5736a3a24d], Ref[refs/tags/dhp-1.2.0=85c96bd95517be30d93692630f29806f39c68b8c], Ref[refs/tags/dhp-1.2.1=2b632494536e76ba5b190d8bda8841e79b7a4704], Ref[refs/tags/dhp-1.2.2=40bb2202a2df622928ce367d205d2a3c18ec4000], Ref[refs/tags/dhp-1.2.3=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd], Ref[refs/tags/dhp-1.2.4=fdbee9aadd3ee119c777c94b53d762ece6352061]] ] [info] Resolved tag [ 1.0.1 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 11:47:41 2019 +0100] ], points at [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ] [info] Resolved tag [ dhp-1.0.2 ] [ PersonIdent[sandro.labruzzo, sandro.labruzzo@isti.cnr.it, Thu Oct 31 12:08:50 2019 +0100] ], points at [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ] [info] Resolved tag [ dhp-1.0.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Nov 4 12:34:47 2019 +0100] ], points at [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ] [info] Resolved tag [ dhp-1.0.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Nov 7 17:39:28 2019 +0100] ], points at [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ] [info] Resolved tag [ dhp-1.1.5 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Feb 13 18:11:32 2020 +0100] ], points at [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ] [info] Resolved tag [ dhp-1.1.6 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Mar 30 20:05:58 2020 +0200] ], points at [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ] [info] Resolved tag [ dhp-1.1.7 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri May 8 17:01:29 2020 +0200] ], points at [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ] [info] Resolved tag [ dhp-1.2.0 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 11 10:17:12 2020 +0200] ], points at [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ] [info] Resolved tag [ dhp-1.2.1 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon May 25 19:48:16 2020 +0200] ], points at [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ] [info] Resolved tag [ dhp-1.2.2 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Fri Jun 12 12:21:05 2020 +0200] ], points at [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ] [info] Resolved tag [ dhp-1.2.3 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Mon Jun 22 11:27:41 2020 +0200] ], points at [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ] [info] Resolved tag [ dhp-1.2.4 ] [ PersonIdent[Claudio Atzori, claudio.atzori@isti.cnr.it, Thu Apr 7 13:32:21 2022 +0200] ], points at [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ] [info] key [ commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------ ], tags => [ [DatedRevTag{id=cb5f978660ee4bc6f8d547caf7709a5736a3a24d, tagName='dhp-1.1.7', date=May 8, 2020 3:01:29 PM +00:00}] ] [info] key [ commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------ ], tags => [ [DatedRevTag{id=40bb2202a2df622928ce367d205d2a3c18ec4000, tagName='dhp-1.2.2', date=June 12, 2020 10:21:05 AM +00:00}] ] [info] key [ commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------ ], tags => [ [DatedRevTag{id=13ba91334cb0bc12d3d4f059f6f0e3f10de220e1, tagName='dhp-1.0.4', date=November 7, 2019 4:39:28 PM +00:00}] ] [info] key [ commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------ ], tags => [ [DatedRevTag{id=eb2af119a744c2cd8a7ccbea73e76ab0240de8fd, tagName='dhp-1.2.3', date=June 22, 2020 9:27:41 AM +00:00}] ] [info] key [ commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------ ], tags => [ [DatedRevTag{id=9d28b5d7c56b368e7a84efd1ada56b27ac55bb10, tagName='dhp-1.1.6', date=March 30, 2020 6:05:58 PM +00:00}] ] [info] key [ commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------ ], tags => [ [DatedRevTag{id=85c96bd95517be30d93692630f29806f39c68b8c, tagName='dhp-1.2.0', date=May 11, 2020 8:17:12 AM +00:00}] ] [info] key [ commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------ ], tags => [ [DatedRevTag{id=d9fdf571c86cfdbd27e1153c587a1da7f2525e33, tagName='dhp-1.0.3', date=November 4, 2019 11:34:47 AM +00:00}] ] [info] key [ commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------ ], tags => [ [DatedRevTag{id=fdbee9aadd3ee119c777c94b53d762ece6352061, tagName='dhp-1.2.4', date=April 7, 2022 11:32:21 AM +00:00}] ] [info] key [ commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------ ], tags => [ [DatedRevTag{id=1406b298f27fc42fd5aeaf5be1b92c7bd2a61570, tagName='dhp-1.1.5', date=February 13, 2020 5:11:32 PM +00:00}] ] [info] key [ commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------ ], tags => [ [DatedRevTag{id=2b632494536e76ba5b190d8bda8841e79b7a4704, tagName='dhp-1.2.1', date=May 25, 2020 5:48:16 PM +00:00}] ] [info] key [ commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------ ], tags => [ [DatedRevTag{id=26bd6211a3c51d2d2358b6cc72004808d8e318ce, tagName='1.0.1', date=October 31, 2019 10:47:41 AM +00:00}] ] [info] key [ commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------ ], tags => [ [DatedRevTag{id=fdf024d17efe96629fdcafc00888429233e8a42b, tagName='dhp-1.0.2', date=October 31, 2019 11:08:50 AM +00:00}] ] [info] Created map: [ {commit 6e47c724c6fdd9ed34c510af4e2e69ceb3e0dbc3 0 ------=[dhp-1.1.7], commit f0746a76055527b5b4855af4533bebe76f4e7c30 0 ------=[dhp-1.2.2], commit 58918967d9a8880bbd409b62e256b443f16e2d4d 0 ------=[dhp-1.0.4], commit 1e3dab06318516b1eda81fe42dd370aa2c726d0b 0 ------=[dhp-1.2.3], commit 76d9315129ba009ca020a79e34ff6ec07f0e2560 0 ------=[dhp-1.1.6], commit c267d958d5e82abe44680740533c7dcfb48057c0 0 ------=[dhp-1.2.0], commit 34b0e7b40a9a4bb21ab1df6263a7130422b1b8d3 0 ------=[dhp-1.0.3], commit 86585a6b274ad8e0beaa9e7f43d123b7320739be 0 ------=[dhp-1.2.4], commit 6ed9a15bc8319f1d19453f49119bd19a29defb46 0 ------=[dhp-1.1.5], commit 01c2e933958a17d6a23b150d5d8fdccf371baf09 0 ------=[dhp-1.2.1], commit 3150c7ce6d7607bbd302f0a4967aa165fddaef84 0 ------=[1.0.1], commit f224613b402ede31257601bdf7d81f30e081c4d3 0 ------=[dhp-1.0.2]} ] [info] HEAD is [ 9c1df1507157c5fcbfa35842c67c8887b137dedc ] [info] Repo is in dirty state [ false ] [info] git.commit.id.describe dhp-1.2.4-345-g9c1df15 [info] git.commit.id 9c1df1507157c5fcbfa35842c67c8887b137dedc [info] git.commit.id.abbrev 9c1df15 [info] git.commit.user.name michele.artini [info] git.commit.user.email michele.artini@isti.cnr.it [info] git.commit.message.full null values in date range conditions [info] git.commit.message.short null values in date range conditions [info] git.commit.time 2023-02-13T15:05:58+0000 [info] git.remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop [info] git.tags [info] git.build.time 2023-03-23T15:16:42+0000 [info] git.commit.id.describe-short dhp-1.2.4-345 [info] found property git.tags [info] found property git.commit.id.abbrev [info] found property git.commit.user.email [info] found property git.commit.message.full [info] found property git.commit.id [info] found property git.commit.id.describe-short [info] found property git.commit.message.short [info] found property git.commit.user.name [info] found property git.build.user.name [info] found property git.commit.id.describe [info] found property git.build.user.email [info] found property git.branch [info] found property git.commit.time [info] found property git.build.time [info] found property git.remote.origin.url [info] Writing properties file to [ /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/oozie_app/version.properties ] (for module dhp-graph-provision )... [info] dhp-graph-provision ] project dhp-graph-provision [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-provision --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 31 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Some input files use or override a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 41 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 41 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-provision --- [INFO] Total Files Processed: 41 in 00:00.625 [INFO] Already Sorted: 41 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 23 resources [INFO] [INFO] --- maven-antrun-plugin:1.3:run (installer-copy-custom) @ dhp-graph-provision --- [INFO] Executing tasks [unjar] Expanding: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer@tmp/.m2/eu/dnetlib/dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/assembly-resources [INFO] Executed tasks [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 31 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Some input files use or override a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 111 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 10 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-provision --- [INFO] Tests are skipped. [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-provision --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-dependency-plugin:3.0.0:copy-dependencies (copy dependencies) @ dhp-graph-provision --- [INFO] [INFO] --- maven-jar-plugin:3.0.2:test-jar (attach-test-resources-package) @ dhp-graph-provision --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- primer-maven-plugin:1.2.0:prime (priming) @ dhp-graph-provision --- [INFO] Priming eu/dnetlib/dhp/sx/provision into /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/primed [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-default-properties) @ dhp-graph-provision --- [INFO] Loading classpath:project-default.properties [INFO] [INFO] --- properties-maven-plugin:2.0.1:read-project-properties (read-job-properties) @ dhp-graph-provision --- [INFO] [INFO] --- dhp-build-properties-maven-plugin:1.2.5-SNAPSHOT:write-project-properties (write-job-properties) @ dhp-graph-provision --- [INFO] Ignoring non-existent properties file '/var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/primed/job.properties' [INFO] Ignoring non-existent properties file 'job-override.properties' [INFO] Creating /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/job.properties [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-provision --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-assembly-plugin:3.0.0:single (assembly-oozie-installer) @ dhp-graph-provision --- [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [INFO] Copying files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package_shell_scripts [WARNING] Assembly file: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package_shell_scripts is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-antrun-plugin:1.3:run (default) @ dhp-graph-provision --- [INFO] Executing tasks [copy] Copying 2 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/oozie_app [mkdir] Created dir: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/oozie_app/lib [copy] Copying 84 files to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/oozie_app/lib [copy] Copying 1 file to /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package/oozie_app/lib [tar] Building tar: /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package.tar.gz [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package [delete] Deleting directory /var/lib/jenkins/workspace/dnet-hadoop_CD_BETA_scholexplorer/dnet-hadoop/dhp-workflows/dhp-graph-provision/target/oozie-package_shell_scripts [INFO] Executed tasks [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (create-target-dir) @ dhp-graph-provision --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (upload-oozie-package) @ dhp-graph-provision --- [INFO] [INFO] --- exec-maven-plugin:1.5.0:exec (extract-and-upload-to-hdfs) @ dhp-graph-provision --- + '[' 0 = 0 ']' ++ pwd + target_dir_root=/home/git.dnet/oozie-packages/sx/provision/2023-03-23_15_16/oozie_app + hadoop fs -rm -r /user/git.dnet/sx/provision 23/03/23 15:17:08 INFO fs.TrashPolicyDefault: Moved: 'hdfs://nameservice1/user/git.dnet/sx/provision' to trash at: hdfs://nameservice1/user/git.dnet/.Trash/Current/user/git.dnet/sx/provision + hadoop fs -mkdir -p /user/git.dnet/sx/provision + hadoop fs -mkdir -p /user/git.dnet/sx/provision/working_dir + hadoop fs -put /home/git.dnet/oozie-packages/sx/provision/2023-03-23_15_16/oozie_app /user/git.dnet/sx/provision [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 52.936 s [INFO] Finished at: 2023-03-23T15:17:30Z [INFO] ------------------------------------------------------------------------ + ssh git.dnet@iis-cdh5-test-gw.ocean.icm.edu.pl cd /tmp2/git.dnet/dnet-hadoop/BETA/2023-03-23 && sh deploy_release.sh sx/provision /lib/dnet/PROD/scholix sx/provision + app_dir=sx/provision + hdfs_target_root_dir=/lib/dnet/PROD/scholix + app_target_dir=sx/provision ++ whoami + user_name=git.dnet + export HADOOP_USER_NAME=hdfs + HADOOP_USER_NAME=hdfs + hdfs_app_source_dir=/user/git.dnet/sx/provision/oozie_app + hdfs_target_dir=/lib/dnet/PROD/scholix/sx/provision + hdfs dfs -rm -r -f /lib/dnet/PROD/scholix/sx/provision + hdfs dfs -mkdir -p /lib/dnet/PROD/scholix/sx/provision + hdfs dfs -mv /user/git.dnet/sx/provision/oozie_app /lib/dnet/PROD/scholix/sx/provision [Pipeline] } $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 28677 killed; [ssh-agent] Stopped. [Pipeline] // sshagent [Pipeline] } [Pipeline] // withEnv [Pipeline] } Deleting 1 temporary files [Pipeline] // configFileProvider [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS