Started by timer Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on ip-90-147-189-52.pa1.garrservices.it (slave-2-garr) in workspace /var/lib/jenkins/workspace/dnet-hadoop_branch_beta [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://code-repo.d4science.org/D-Net/dnet-hadoop.git > git init /var/lib/jenkins/workspace/dnet-hadoop_branch_beta # timeout=10 Fetching upstream changes from https://code-repo.d4science.org/D-Net/dnet-hadoop.git > git --version # timeout=10 > git --version # 'git version 2.17.1' > git fetch --tags --progress -- https://code-repo.d4science.org/D-Net/dnet-hadoop.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://code-repo.d4science.org/D-Net/dnet-hadoop.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/beta^{commit} # timeout=10 Checking out Revision 589bce3520c865ad3c7d2d333b1ede0ccfac0c0e (refs/remotes/origin/beta) > git config core.sparsecheckout # timeout=10 > git checkout -f 589bce3520c865ad3c7d2d333b1ede0ccfac0c0e # timeout=10 Commit message: "Merge pull request '[pBETA] Improvements to copying data from ocean to impala' (#421) from antonis.lempesis/dnet-hadoop:beta into beta" > git rev-list --no-walk 3cad4a415d68c495fe723adadf9b43c46d72e80d # timeout=10 [dnet-hadoop_branch_beta] $ /bin/sh -xe /tmp/jenkins116031775915469200.sh + export SPARK_LOCAL_IP=127.0.0.1 Parsing POMs Modules changed, recalculating dependency graph Established TCP socket on 33377 maven35-agent.jar already up to date maven35-interceptor.jar already up to date maven3-interceptor-commons.jar already up to date [dnet-hadoop_branch_beta] $ /usr/lib/jvm/java-8-openjdk-amd64/bin/java -cp /var/lib/jenkins/maven35-agent.jar:/var/lib/jenkins/tools/hudson.tasks.Maven_MavenInstallation/maven/boot/plexus-classworlds-2.5.2.jar:/var/lib/jenkins/tools/hudson.tasks.Maven_MavenInstallation/maven/conf/logging jenkins.maven3.agent.Maven35Main /var/lib/jenkins/tools/hudson.tasks.Maven_MavenInstallation/maven /var/lib/jenkins/remoting.jar /var/lib/jenkins/maven35-interceptor.jar /var/lib/jenkins/maven3-interceptor-commons.jar 33377 <===[JENKINS REMOTING CAPACITY]===>channel started Executing Maven: -B -f /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/pom.xml clean test package -U source:jar [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] dhp-code-style [jar] [INFO] dhp [pom] [INFO] dhp-build [pom] [INFO] dhp-build-assembly-resources [jar] [INFO] dhp-build-properties-maven-plugin [maven-plugin] [INFO] dhp-pace-core [jar] [INFO] dhp-common [jar] [INFO] dhp-workflows [pom] [INFO] dhp-workflow-profiles [jar] [INFO] dhp-aggregation [jar] [INFO] dhp-actionmanager [jar] [INFO] dhp-graph-mapper [jar] [INFO] dhp-dedup-openaire [jar] [INFO] dhp-enrichment [jar] [INFO] dhp-graph-provision [jar] [INFO] dhp-blacklist [jar] [INFO] dhp-stats-actionsets [jar] [INFO] dhp-stats-hist-snaps [jar] [INFO] dhp-stats-monitor-irish [jar] [INFO] dhp-stats-monitor-update [jar] [INFO] dhp-stats-update [jar] [INFO] dhp-stats-promote [jar] [INFO] dhp-usage-stats-build [jar] [INFO] dhp-usage-raw-data-update [jar] [INFO] dhp-broker-events [jar] [INFO] dhp-doiboost [jar] [INFO] dhp-impact-indicators [jar] [INFO] dhp-swh [jar] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml (21 kB at 21 kB/s) [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml (14 kB at 14 kB/s) [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-code-style >-------------------- [INFO] Building dhp-code-style 1.2.5-SNAPSHOT [1/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (967 B at 14 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-code-style --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ dhp-code-style --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-code-style --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ dhp-code-style --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ dhp-code-style --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ dhp-code-style --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.3.1:jar (default-cli) > generate-sources @ dhp-code-style >>> [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.3.1:jar (default-cli) < generate-sources @ dhp-code-style <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.3.1:jar (default-cli) @ dhp-code-style --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -------------------------< eu.dnetlib.dhp:dhp >------------------------- [INFO] Building dhp 1.2.5-SNAPSHOT [2/28] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp --- [INFO] Total Files Processed: 0 in 00:00.003 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp --- [INFO] [INFO] ----------------------< eu.dnetlib.dhp:dhp-build >---------------------- [INFO] Building dhp-build 1.2.5-SNAPSHOT [3/28] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-build >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-build <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-build --- [INFO] [INFO] ------------< eu.dnetlib.dhp:dhp-build-assembly-resources >------------- [INFO] Building dhp-build-assembly-resources 1.2.5-SNAPSHOT [4/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build-assembly-resources --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-assembly-resources --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-assembly-resources --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-assembly-resources --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-assembly-resources --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-assembly-resources --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-assembly-resources --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-assembly-resources --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-assembly-resources --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-assembly-resources --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-assembly-resources --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build-assembly-resources --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-build-assembly-resources --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-build-assembly-resources >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-assembly-resources --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-assembly-resources --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-build-assembly-resources <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-build-assembly-resources --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ----------< eu.dnetlib.dhp:dhp-build-properties-maven-plugin >---------- [INFO] Building dhp-build-properties-maven-plugin 1.2.5-SNAPSHOT [5/28] [INFO] ----------------------------[ maven-plugin ]---------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-build-properties-maven-plugin --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-properties-maven-plugin --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 4 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 4 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-properties-maven-plugin --- [INFO] Total Files Processed: 4 in 00:00.776 [INFO] Already Sorted: 4 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-properties-maven-plugin --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/classes [INFO] [INFO] --- maven-plugin-plugin:3.3:descriptor (default-descriptor) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to read mojo metadata. [INFO] Applying mojo extractor for language: java [INFO] Mojo extractor for language: java found 2 mojo descriptors. [INFO] Applying mojo extractor for language: bsh [INFO] Mojo extractor for language: bsh found 0 mojo descriptors. [INFO] Applying mojo extractor for language: java-annotations [INFO] Mojo extractor for language: java-annotations found 0 mojo descriptors. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-properties-maven-plugin --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-properties-maven-plugin --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.maven.plugin.properties.WritePredefinedProjectPropertiesTest [INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.49 s - in eu.dnetlib.maven.plugin.properties.WritePredefinedProjectPropertiesTest [INFO] Running eu.dnetlib.maven.plugin.properties.GenerateOoziePropertiesMojoTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in eu.dnetlib.maven.plugin.properties.GenerateOoziePropertiesMojoTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-properties-maven-plugin --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 4 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 4 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-build-properties-maven-plugin --- [INFO] Total Files Processed: 4 in 00:00.066 [INFO] Already Sorted: 4 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-build-properties-maven-plugin --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-plugin-plugin:3.3:descriptor (default-descriptor) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to read mojo metadata. [INFO] Applying mojo extractor for language: java [INFO] Mojo extractor for language: java found 2 mojo descriptors. [INFO] Applying mojo extractor for language: bsh [INFO] Mojo extractor for language: bsh found 0 mojo descriptors. [INFO] Applying mojo extractor for language: java-annotations [INFO] Mojo extractor for language: java-annotations found 0 mojo descriptors. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-build-properties-maven-plugin --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-build-properties-maven-plugin --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-build-properties-maven-plugin --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-build-properties-maven-plugin --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/jacoco.exec [INFO] Analyzed bundle 'dhp-build-properties-maven-plugin' with 2 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-build-properties-maven-plugin --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar [INFO] [INFO] --- maven-plugin-plugin:3.3:addPluginArtifactMetadata (default-addPluginArtifactMetadata) @ dhp-build-properties-maven-plugin --- [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-build-properties-maven-plugin >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-build-properties-maven-plugin --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-build-properties-maven-plugin --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-build-properties-maven-plugin <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-build-properties-maven-plugin --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-pace-core >-------------------- [INFO] Building dhp-pace-core 1.2.5-SNAPSHOT [6/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-pace-core --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-pace-core --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-pace-core --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-pace-core --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-pace-core --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 93 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkDeduper.scala:125: non-variable type argument Any in type pattern scala.collection.mutable.WrappedArray[Any] is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:107: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:115: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:122: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] four warnings found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/config/DedupConfig.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/config/DedupConfig.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 100 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 100 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-pace-core --- [INFO] Total Files Processed: 100 in 00:00.435 [INFO] Already Sorted: 99 [INFO] Needed Sorting: 1 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-pace-core --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 93 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/tree/support/AbstractComparator.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/tree/support/AbstractComparator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-pace-core --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 7 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-pace-core --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-pace-core --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.pace.util.IncrementalConnectedComponentsTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in eu.dnetlib.pace.util.IncrementalConnectedComponentsTest [INFO] Running eu.dnetlib.pace.util.UtilTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.812 s - in eu.dnetlib.pace.util.UtilTest [INFO] Running eu.dnetlib.pace.comparators.ComparatorTest [INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.14 s - in eu.dnetlib.pace.comparators.ComparatorTest [INFO] Running eu.dnetlib.pace.common.PaceFunctionTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in eu.dnetlib.pace.common.PaceFunctionTest [INFO] Running eu.dnetlib.pace.clustering.ClusteringFunctionTest [INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.137 s - in eu.dnetlib.pace.clustering.ClusteringFunctionTest [INFO] Running eu.dnetlib.pace.config.ConfigTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.382 s - in eu.dnetlib.pace.config.ConfigTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 44, Failures: 0, Errors: 0, Skipped: 0 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-pace-core --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-pace-core --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-pace-core --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-pace-core --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 93 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkDeduper.scala:125: non-variable type argument Any in type pattern scala.collection.mutable.WrappedArray[Any] is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:107: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:115: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/model/SparkModel.scala:122: non-variable type argument String in type pattern Seq[String] (the underlying of Seq[String]) is unchecked since it is eliminated by erasure [WARNING] four warnings found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/config/DedupConfig.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/java/eu/dnetlib/pace/config/DedupConfig.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 100 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 100 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-pace-core --- [INFO] Total Files Processed: 100 in 00:00.234 [INFO] Already Sorted: 100 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-pace-core --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-pace-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-pace-core --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 7 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-pace-core --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-pace-core --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-pace-core --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/jacoco.exec [INFO] Analyzed bundle 'dhp-pace-core' with 137 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-pace-core --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/dhp-pace-core-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-pace-core >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-pace-core --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-pace-core --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-pace-core --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-pace-core --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-pace-core <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-pace-core --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/dhp-pace-core-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ---------------------< eu.dnetlib.dhp:dhp-common >---------------------- [INFO] Building dhp-common 1.2.5-SNAPSHOT [7/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/cnr-rmi-api/maven-metadata.xml 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https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml (2.2 kB at 14 kB/s) [INFO] Downloading from maven-restlet: https://maven.restlet.talend.com/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloading from conjars: https://conjars.wensel.net/repo/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml (2.6 kB at 18 kB/s) [INFO] Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dhp/dhp-schemas/maven-metadata.xml [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-common --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 4 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: DedupLogModel.scala Correctly formatted: DedupLogWriter.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 4 Scala sources and 87 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/GroupEntitiesSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/GroupEntitiesSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 104 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 104 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 104 in 00:00.282 [INFO] Already Sorted: 104 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-common >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 4 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: DedupLogModel.scala Correctly formatted: DedupLogWriter.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 104 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 104 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 104 in 00:00.197 [INFO] Already Sorted: 104 [INFO] Needed Sorting: 0 [WARNING] Failed to getClass for scala_maven.ScalaDocMojo [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-common <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-common --- model contains 128 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 87 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/MergeComparator.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/MergeComparator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 33 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 17 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java:-1: Recompile with -Xlint:deprecation for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 17 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-common --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.scholexplorer.relation.RelationMapperTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.511 s - in eu.dnetlib.scholexplorer.relation.RelationMapperTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.ISNICleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in eu.dnetlib.dhp.schema.oaf.utils.ISNICleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.RorCleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in eu.dnetlib.dhp.schema.oaf.utils.RorCleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtilsTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.366 s - in eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtilsTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.PmidCleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in eu.dnetlib.dhp.schema.oaf.utils.PmidCleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.MergeUtilsTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 s - in eu.dnetlib.dhp.schema.oaf.utils.MergeUtilsTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.BlackListProviderTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in eu.dnetlib.dhp.schema.oaf.utils.BlackListProviderTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.PICCleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in eu.dnetlib.dhp.schema.oaf.utils.PICCleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.PmcCleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in eu.dnetlib.dhp.schema.oaf.utils.PmcCleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.GridCleaningRuleTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in eu.dnetlib.dhp.schema.oaf.utils.GridCleaningRuleTest [INFO] Running eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactoryTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactoryTest [INFO] Running eu.dnetlib.dhp.common.SparkSessionSupportTest [INFO] Running eu.dnetlib.dhp.common.SparkSessionSupportTest$RunWithSparkSession [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.394 s - in eu.dnetlib.dhp.common.SparkSessionSupportTest$RunWithSparkSession [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.396 s - in eu.dnetlib.dhp.common.SparkSessionSupportTest [INFO] Running eu.dnetlib.dhp.common.HdfsSupportTest [INFO] Running eu.dnetlib.dhp.common.HdfsSupportTest$ListFiles [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.765 s - in eu.dnetlib.dhp.common.HdfsSupportTest$ListFiles [INFO] Running eu.dnetlib.dhp.common.HdfsSupportTest$Remove [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.048 s - in eu.dnetlib.dhp.common.HdfsSupportTest$Remove [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.816 s - in eu.dnetlib.dhp.common.HdfsSupportTest [INFO] Running eu.dnetlib.dhp.common.PacePersonTest [WARNING] Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.021 s - in eu.dnetlib.dhp.common.PacePersonTest [INFO] Running eu.dnetlib.dhp.application.ArgumentApplicationParserTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in eu.dnetlib.dhp.application.ArgumentApplicationParserTest [INFO] [INFO] Results: [INFO] [WARNING] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 4 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: DedupLogModel.scala Correctly formatted: DedupLogWriter.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 4 Scala sources and 87 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/GroupEntitiesSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/GroupEntitiesSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 104 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 104 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 104 in 00:00.180 [INFO] Already Sorted: 104 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-common >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 4 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: DedupLogModel.scala Correctly formatted: DedupLogWriter.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-common --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 104 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 104 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-common --- [INFO] Total Files Processed: 104 in 00:00.313 [INFO] Already Sorted: 104 [INFO] Needed Sorting: 0 [WARNING] Failed to getClass for scala_maven.ScalaDocMojo [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-common <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-common --- model contains 128 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-common --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 33 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 17 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/java/eu/dnetlib/dhp/common/api/ZenodoAPIClientTest.java:-1: Recompile with -Xlint:deprecation for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-common --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-common --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-common --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec [INFO] Analyzed bundle 'dhp-common' with 128 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-common --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/dhp-common-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-common >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-common --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 4 were unformatted Details: Correctly formatted: ScholixUtils.scala Correctly formatted: DedupLogModel.scala Correctly formatted: DedupLogWriter.scala Correctly formatted: SparkScalaApplication.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-common --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-common --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-common --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-common <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-common --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/dhp-common-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-workflows >-------------------- [INFO] Building dhp-workflows 1.2.5-SNAPSHOT [8/28] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-workflows --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflows --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflows --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflows --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflows --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflows --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflows --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflows --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflows --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-workflows --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-workflows >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflows --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflows --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-workflows <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-workflows --- [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-workflow-profiles >---------------- [INFO] Building dhp-workflow-profiles 1.2.5-SNAPSHOT [9/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-workflow-profiles --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflow-profiles --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflow-profiles --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflow-profiles --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 22 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-workflow-profiles --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflow-profiles --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflow-profiles --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-workflow-profiles --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 22 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-workflow-profiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-workflow-profiles --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-workflow-profiles --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-workflow-profiles --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-workflow-profiles --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-workflow-profiles >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-workflow-profiles --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-workflow-profiles --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-workflow-profiles <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-workflow-profiles --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-aggregation >------------------- [INFO] Building dhp-aggregation 1.2.5-SNAPSHOT [10/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-aggregation --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: SparkApplyUpdate.scala Correctly formatted: SparkGenerateORCIDTable.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 18 Scala sources and 103 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/classes ... [WARNING] [Warn] : there were two deprecation warnings; re-run with -deprecation for details [WARNING] one warning found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 140 [INFO] Successfully formatted: 3 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 137 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 1s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 140 in 00:00.912 [INFO] Already Sorted: 140 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 97 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-aggregation >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: SparkApplyUpdate.scala Correctly formatted: SparkGenerateORCIDTable.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 2 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 140 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 140 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 140 in 00:00.310 [INFO] Already Sorted: 140 [INFO] Needed Sorting: 0 [WARNING] Failed to getClass for scala_maven.ScalaDocMojo [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-aggregation <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-aggregation --- model contains 186 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 103 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java: Some input files use or override a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/orcid/OrcidParser.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/orcid/OrcidParser.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 120 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 37 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/test-classes ... [WARNING] [Warn] : there were three deprecation warnings; re-run with -deprecation for details [WARNING] one warning found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java:-1: Recompile with -Xlint:deprecation for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-aggregation --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 37 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-aggregation --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest [ERROR] Tests run: 7, Failures: 3, Errors: 1, Skipped: 0, Time elapsed: 12.516 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest [ERROR] eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testRelationsSemantics Time elapsed: 0.371 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <23> but was: <0> at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testRelationsSemantics(CreateTAActionSetTest.java:232) [ERROR] eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.createActionSet Time elapsed: 2.248 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.createActionSet(CreateTAActionSetTest.java:83) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.createActionSet(CreateTAActionSetTest.java:83) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 6 in stage 0.0 failed 1 times, most recent failure: Lost task 6.0 in stage 0.0 (TID 6, localhost, executor driver): java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! at org.apache.hadoop.io.SequenceFile$Writer.(SequenceFile.java:1150) at org.apache.hadoop.io.SequenceFile$BlockCompressWriter.(SequenceFile.java:1509) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:275) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:528) at org.apache.hadoop.mapred.SequenceFileOutputFormat.getRecordWriter(SequenceFileOutputFormat.java:63) at org.apache.spark.internal.io.HadoopMapRedWriteConfigUtil.initWriter(SparkHadoopWriter.scala:228) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:122) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Driver stacktrace: at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.createActionSet(CreateTAActionSetTest.java:83) Caused by: java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! [ERROR] eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testNumberofRelations2 Time elapsed: 0.213 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <23> but was: <0> at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testNumberofRelations2(CreateTAActionSetTest.java:121) [ERROR] eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testRelationsSourceTargetCouple Time elapsed: 0.302 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <5> but was: <0> at eu.dnetlib.dhp.actionmanager.transformativeagreement.CreateTAActionSetTest.testRelationsSourceTargetCouple(CreateTAActionSetTest.java:310) [INFO] Running eu.dnetlib.dhp.actionmanager.fosnodoi.GetFosTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.196 s - in eu.dnetlib.dhp.actionmanager.fosnodoi.GetFosTest [INFO] Running eu.dnetlib.dhp.actionmanager.fosnodoi.PrepareTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 204.896 s - in eu.dnetlib.dhp.actionmanager.fosnodoi.PrepareTest [INFO] Running eu.dnetlib.dhp.actionmanager.ror.GenerateRorActionSetJobTest [WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.056 s - in eu.dnetlib.dhp.actionmanager.ror.GenerateRorActionSetJobTest [INFO] Running eu.dnetlib.dhp.actionmanager.createunresolvedentities.GetFosTest [WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.963 s - in eu.dnetlib.dhp.actionmanager.createunresolvedentities.GetFosTest [INFO] Running eu.dnetlib.dhp.actionmanager.createunresolvedentities.PrepareTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 611.905 s - in eu.dnetlib.dhp.actionmanager.createunresolvedentities.PrepareTest [INFO] Running eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest [ERROR] Tests run: 10, Failures: 5, Errors: 1, Skipped: 0, Time elapsed: 5,992.996 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSomeNumbers Time elapsed: 504.793 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <105> but was: <20> at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSomeNumbers(ProduceTest.java:321) [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTest3Measures Time elapsed: 506.387 s <<< ERROR! java.lang.NullPointerException at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTest3Measures(ProduceTest.java:209) [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSubjects Time elapsed: 534.079 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: but was: at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.lambda$produceTestSubjects$0(ProduceTest.java:80) at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSubjects(ProduceTest.java:80) [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestMeasures Time elapsed: 553.109 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <86> but was: <0> at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestMeasures(ProduceTest.java:306) [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTest6Subjects Time elapsed: 547.046 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <6> but was: <7> at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTest6Subjects(ProduceTest.java:164) [ERROR] eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSomeNumbersWithSDG Time elapsed: 778.583 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <136> but was: <51> at eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest.produceTestSomeNumbersWithSDG(ProduceTest.java:487) [INFO] Running eu.dnetlib.dhp.actionmanager.project.PrepareProjectTest [WARNING] Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 1.549 s - in eu.dnetlib.dhp.actionmanager.project.PrepareProjectTest [INFO] Running eu.dnetlib.dhp.actionmanager.project.ReadProgrammeTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.354 s - in eu.dnetlib.dhp.actionmanager.project.ReadProgrammeTest [INFO] Running eu.dnetlib.dhp.actionmanager.project.ReadProjectsTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.251 s - in eu.dnetlib.dhp.actionmanager.project.ReadProjectsTest [INFO] Running eu.dnetlib.dhp.actionmanager.project.ReadTopicTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.126 s - in eu.dnetlib.dhp.actionmanager.project.ReadTopicTest [INFO] Running eu.dnetlib.dhp.actionmanager.project.PrepareH2020ProgrammeTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.215 s - in eu.dnetlib.dhp.actionmanager.project.PrepareH2020ProgrammeTest [INFO] Running eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 8.847 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest [ERROR] eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.numberDistinctProgrammeTest Time elapsed: 8.746 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.numberDistinctProgrammeTest(SparkUpdateProjectTest.java:75) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.numberDistinctProgrammeTest(SparkUpdateProjectTest.java:75) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 97 in stage 3.0 failed 1 times, most recent failure: Lost task 97.0 in stage 3.0 (TID 9, localhost, executor driver): org.apache.spark.SparkException: Task failed while writing rows at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:155) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Caused by: java.lang.NullPointerException at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeKeyValue(MergeUtils.java:237) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeOafFields(MergeUtils.java:272) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeOafEntityFields(MergeUtils.java:288) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeProject(MergeUtils.java:648) at eu.dnetlib.dhp.actionmanager.project.SparkAtomicActionJob.lambda$getAtomicActions$13905395$1(SparkAtomicActionJob.java:165) at org.apache.spark.sql.KeyValueGroupedDataset$$anonfun$mapGroups$1.apply(KeyValueGroupedDataset.scala:219) at org.apache.spark.sql.KeyValueGroupedDataset$$anonfun$mapGroups$1.apply(KeyValueGroupedDataset.scala:219) at org.apache.spark.sql.KeyValueGroupedDataset$$anonfun$1.apply(KeyValueGroupedDataset.scala:196) at org.apache.spark.sql.KeyValueGroupedDataset$$anonfun$1.apply(KeyValueGroupedDataset.scala:196) at org.apache.spark.sql.execution.MapGroupsExec$$anonfun$10$$anonfun$apply$4.apply(objects.scala:337) at org.apache.spark.sql.execution.MapGroupsExec$$anonfun$10$$anonfun$apply$4.apply(objects.scala:336) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$4.apply(SparkHadoopWriter.scala:128) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$4.apply(SparkHadoopWriter.scala:127) at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1439) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:139) ... 10 more Driver stacktrace: at eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.numberDistinctProgrammeTest(SparkUpdateProjectTest.java:75) Caused by: org.apache.spark.SparkException: Task failed while writing rows Caused by: java.lang.NullPointerException [INFO] Running eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest [ERROR] Tests run: 7, Failures: 3, Errors: 1, Skipped: 0, Time elapsed: 1.427 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testRelationsSemantics Time elapsed: 0.165 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <23> but was: <0> at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testRelationsSemantics(CreateOpenCitationsASTest.java:242) [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations2 Time elapsed: 0.203 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <23> but was: <0> at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations2(CreateOpenCitationsASTest.java:133) [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations Time elapsed: 0.203 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations(CreateOpenCitationsASTest.java:83) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations(CreateOpenCitationsASTest.java:83) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 1 times, most recent failure: Lost task 0.0 in stage 0.0 (TID 0, localhost, executor driver): java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! at org.apache.hadoop.io.SequenceFile$Writer.(SequenceFile.java:1150) at org.apache.hadoop.io.SequenceFile$BlockCompressWriter.(SequenceFile.java:1509) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:275) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:528) at org.apache.hadoop.mapred.SequenceFileOutputFormat.getRecordWriter(SequenceFileOutputFormat.java:63) at org.apache.spark.internal.io.HadoopMapRedWriteConfigUtil.initWriter(SparkHadoopWriter.scala:228) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:122) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Driver stacktrace: at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testNumberofRelations(CreateOpenCitationsASTest.java:83) Caused by: java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testRelationsSourceTargetCouple Time elapsed: 0.236 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <5> but was: <0> at eu.dnetlib.dhp.actionmanager.opencitations.CreateOpenCitationsASTest.testRelationsSourceTargetCouple(CreateOpenCitationsASTest.java:320) [INFO] Running eu.dnetlib.dhp.actionmanager.opencitations.ReadCOCITest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.19 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.opencitations.ReadCOCITest [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.ReadCOCITest.testReadCOCI Time elapsed: 0.087 s <<< ERROR! org.apache.commons.cli.UnrecognizedOptionException: Unrecognized option: -workingPath at eu.dnetlib.dhp.actionmanager.opencitations.ReadCOCITest.testReadCOCI(ReadCOCITest.java:114) [INFO] Running eu.dnetlib.dhp.actionmanager.opencitations.RemapTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.125 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.opencitations.RemapTest [ERROR] eu.dnetlib.dhp.actionmanager.opencitations.RemapTest.testRemap Time elapsed: 0.024 s <<< ERROR! java.io.IOException: Incomplete HDFS URI, no host: hdfs://input1;input2;input3;input4;input5 at eu.dnetlib.dhp.actionmanager.opencitations.RemapTest.testRemap(RemapTest.java:78) [INFO] Running eu.dnetlib.dhp.actionmanager.usagestats.SparkAtomicActionCountJobTest [ERROR] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 9.247 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.usagestats.SparkAtomicActionCountJobTest [ERROR] eu.dnetlib.dhp.actionmanager.usagestats.SparkAtomicActionCountJobTest.testUsageStatsDb2 Time elapsed: 1.743 s <<< ERROR! org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory file:/tmp/SparkAtomicActionCountJobTest1298751875425534905/actionSet already exists at eu.dnetlib.dhp.actionmanager.usagestats.SparkAtomicActionCountJobTest.testUsageStatsDb2(SparkAtomicActionCountJobTest.java:76) [INFO] Running eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 1.329 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest [ERROR] eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.testScores Time elapsed: 1.187 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.runJob(SparkAtomicActionScoreJobTest.java:77) at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.testScores(SparkAtomicActionScoreJobTest.java:100) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.runJob(SparkAtomicActionScoreJobTest.java:77) at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.testScores(SparkAtomicActionScoreJobTest.java:100) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 1 times, most recent failure: Lost task 0.0 in stage 0.0 (TID 0, localhost, executor driver): java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! at org.apache.hadoop.io.SequenceFile$Writer.(SequenceFile.java:1150) at org.apache.hadoop.io.SequenceFile$BlockCompressWriter.(SequenceFile.java:1509) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:275) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:528) at org.apache.hadoop.mapred.SequenceFileOutputFormat.getRecordWriter(SequenceFileOutputFormat.java:63) at org.apache.spark.internal.io.HadoopMapRedWriteConfigUtil.initWriter(SparkHadoopWriter.scala:228) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:122) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Driver stacktrace: at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.runJob(SparkAtomicActionScoreJobTest.java:77) at eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJobTest.testScores(SparkAtomicActionScoreJobTest.java:100) Caused by: java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! [INFO] Running eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.662 s <<< FAILURE! - in eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest [ERROR] eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest.testMatch Time elapsed: 0.553 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest.testMatch(PrepareAffiliationRelationsTest.java:84) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest.testMatch(PrepareAffiliationRelationsTest.java:84) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 0.0 failed 1 times, most recent failure: Lost task 3.0 in stage 0.0 (TID 3, localhost, executor driver): java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! at org.apache.hadoop.io.SequenceFile$Writer.(SequenceFile.java:1150) at org.apache.hadoop.io.SequenceFile$BlockCompressWriter.(SequenceFile.java:1509) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:275) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:528) at org.apache.hadoop.mapred.SequenceFileOutputFormat.getRecordWriter(SequenceFileOutputFormat.java:63) at org.apache.spark.internal.io.HadoopMapRedWriteConfigUtil.initWriter(SparkHadoopWriter.scala:228) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:122) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Driver stacktrace: at eu.dnetlib.dhp.actionmanager.bipaffiliations.PrepareAffiliationRelationsTest.testMatch(PrepareAffiliationRelationsTest.java:84) Caused by: java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! [INFO] Running eu.dnetlib.dhp.sx.bio.BioScholixTest [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.041 s - in eu.dnetlib.dhp.sx.bio.BioScholixTest [INFO] Running eu.dnetlib.dhp.datacite.DataciteToOAFTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.222 s - in eu.dnetlib.dhp.datacite.DataciteToOAFTest [INFO] Running eu.dnetlib.dhp.transformation.TransformationJobTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.646 s - in eu.dnetlib.dhp.transformation.TransformationJobTest [INFO] Running eu.dnetlib.dhp.collection.GenerateNativeStoreSparkJobTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8 s - in eu.dnetlib.dhp.collection.GenerateNativeStoreSparkJobTest [INFO] Running eu.dnetlib.dhp.collection.orcid.DownloadORCIDTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.381 s - in eu.dnetlib.dhp.collection.orcid.DownloadORCIDTest [INFO] Running eu.dnetlib.dhp.collection.plugin.base.BaseCollectorPluginTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in eu.dnetlib.dhp.collection.plugin.base.BaseCollectorPluginTest [INFO] Running eu.dnetlib.dhp.collection.plugin.base.BaseTransfomationTest [WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.111 s - in eu.dnetlib.dhp.collection.plugin.base.BaseTransfomationTest [INFO] Running eu.dnetlib.dhp.collection.plugin.utils.JsonUtilsTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 s - in eu.dnetlib.dhp.collection.plugin.utils.JsonUtilsTest [INFO] Running eu.dnetlib.dhp.collection.plugin.rest.OsfPreprintCollectorTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in eu.dnetlib.dhp.collection.plugin.rest.OsfPreprintCollectorTest [INFO] Running eu.dnetlib.dhp.collection.plugin.rest.RestIteratorTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in eu.dnetlib.dhp.collection.plugin.rest.RestIteratorTest [INFO] Running eu.dnetlib.dhp.collection.plugin.rest.RestCollectorPluginTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in eu.dnetlib.dhp.collection.plugin.rest.RestCollectorPluginTest [INFO] Running eu.dnetlib.dhp.collection.plugin.file.FileGZipCollectorPluginTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.225 s - in eu.dnetlib.dhp.collection.plugin.file.FileGZipCollectorPluginTest [INFO] Running eu.dnetlib.dhp.collection.plugin.file.FileCollectorPluginTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 s - in eu.dnetlib.dhp.collection.plugin.file.FileCollectorPluginTest [INFO] [INFO] Results: [INFO] [ERROR] Failures: [ERROR] ProduceTest.produceTest6Subjects:164 expected: <6> but was: <7> [ERROR] ProduceTest.produceTestMeasures:306 expected: <86> but was: <0> [ERROR] ProduceTest.produceTestSomeNumbers:321 expected: <105> but was: <20> [ERROR] ProduceTest.produceTestSomeNumbersWithSDG:487 expected: <136> but was: <51> [ERROR] ProduceTest.produceTestSubjects:80->lambda$produceTestSubjects$0:80 expected: but was: [ERROR] CreateOpenCitationsASTest.testNumberofRelations2:133 expected: <23> but was: <0> [ERROR] CreateOpenCitationsASTest.testRelationsSemantics:242 expected: <23> but was: <0> [ERROR] CreateOpenCitationsASTest.testRelationsSourceTargetCouple:320 expected: <5> but was: <0> [ERROR] CreateTAActionSetTest.testNumberofRelations2:121 expected: <23> but was: <0> [ERROR] CreateTAActionSetTest.testRelationsSemantics:232 expected: <23> but was: <0> [ERROR] CreateTAActionSetTest.testRelationsSourceTargetCouple:310 expected: <5> but was: <0> [ERROR] Errors: [ERROR] PrepareAffiliationRelationsTest.testMatch:84 » Runtime org.apache.spark.SparkE... [ERROR] SparkAtomicActionScoreJobTest.testScores:100->runJob:77 » Runtime org.apache.s... [ERROR] ProduceTest.produceTest3Measures:209 NullPointer [ERROR] CreateOpenCitationsASTest.testNumberofRelations:83 » Runtime org.apache.spark.... [ERROR] ReadCOCITest.testReadCOCI:114 » UnrecognizedOption Unrecognized option: -worki... [ERROR] RemapTest.testRemap:78 » IO Incomplete HDFS URI, no host: hdfs://input1;input2... [ERROR] SparkUpdateProjectTest.numberDistinctProgrammeTest:75 » Runtime org.apache.spa... [ERROR] CreateTAActionSetTest.createActionSet:83 » Runtime org.apache.spark.SparkExcep... [ERROR] SparkAtomicActionCountJobTest.testUsageStatsDb2:76 » FileAlreadyExists Output ... [INFO] [ERROR] Tests run: 95, Failures: 11, Errors: 9, Skipped: 9 [INFO] [ERROR] There are test failures. Please refer to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/surefire-reports for the individual test results. Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: SparkApplyUpdate.scala Correctly formatted: SparkGenerateORCIDTable.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 18 Scala sources and 103 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/classes ... [WARNING] [Warn] : there were two deprecation warnings; re-run with -deprecation for details [WARNING] one warning found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/ReadExcel.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 140 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 140 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 140 in 00:00.299 [INFO] Already Sorted: 140 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 97 resources [INFO] [INFO] >>> scala-maven-plugin:4.0.1:doc (scala-doc) > generate-resources @ dhp-aggregation >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: SparkApplyUpdate.scala Correctly formatted: SparkGenerateORCIDTable.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 140 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 140 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-aggregation --- [INFO] Total Files Processed: 140 in 00:00.310 [INFO] Already Sorted: 140 [INFO] Needed Sorting: 0 [WARNING] Failed to getClass for scala_maven.ScalaDocMojo [INFO] [INFO] <<< scala-maven-plugin:4.0.1:doc (scala-doc) < generate-resources @ dhp-aggregation <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:4.0.1:doc (scala-doc) @ dhp-aggregation --- model contains 186 documentable templates [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-aggregation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-aggregation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 120 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 3 Scala sources and 37 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/test-classes ... [WARNING] [Warn] : there were three deprecation warnings; re-run with -deprecation for details [WARNING] one warning found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java:-1: Recompile with -Xlint:deprecation for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-aggregation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-aggregation --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-aggregation --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec [INFO] Analyzed bundle 'dhp-aggregation' with 427 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-aggregation --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-aggregation >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-aggregation --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 21 were unformatted Details: Correctly formatted: SparkRetrieveDataciteDelta.scala Correctly formatted: PubMedToOaf.scala Correctly formatted: PMParser.scala Correctly formatted: BioDBToOAF.scala Correctly formatted: SparkCreateBaselineDataFrame.scala Correctly formatted: SparkEBILinksToOaf.scala Correctly formatted: SparkDownloadEBILinks.scala Correctly formatted: SparkTransformBioDatabaseToOAF.scala Correctly formatted: DataciteModelConstants.scala Correctly formatted: ImportDatacite.scala Correctly formatted: DataciteAPIImporter.scala Correctly formatted: AbstractRestClient.scala Correctly formatted: SparkDownloadUpdateDatacite.scala Correctly formatted: GenerateDataciteDatasetSpark.scala Correctly formatted: DataciteToOAFTransformation.scala Correctly formatted: CollectionUtils.scala Correctly formatted: SparkApplyUpdate.scala Correctly formatted: SparkGenerateORCIDTable.scala Correctly formatted: BioScholixTest.scala Correctly formatted: DataciteToOAFTest.scala Correctly formatted: DataciteUtilityTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-aggregation --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-aggregation --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-aggregation --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-aggregation <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-aggregation --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-actionmanager >------------------ [INFO] Building dhp-actionmanager 1.2.5-SNAPSHOT [11/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from maven-restlet: https://maven.restlet.talend.com/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml (453 B at 1.8 kB/s) [INFO] Downloading from conjars: https://conjars.wensel.net/repo/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml (343 B at 1.3 kB/s) [INFO] Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from maven-restlet: https://maven.restlet.talend.com/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml (439 B at 1.6 kB/s) [INFO] Downloading from conjars: https://conjars.wensel.net/repo/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml (576 B at 1.8 kB/s) [INFO] Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dnet-actionmanager-common/maven-metadata.xml [INFO] Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/eu/dnetlib/dnet-actionmanager-api/maven-metadata.xml [INFO] Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/eu/dnetlib/cnr-rmi-api/maven-metadata.xml [INFO] Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/org/apache/cxf/cxf-core/maven-metadata.xml [INFO] Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/org/apache/cxf/cxf-core/maven-metadata.xml [INFO] Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml [INFO] Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/org/apache/cxf/cxf-rt-frontend-jaxws/maven-metadata.xml [INFO] Downloading from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/log4j/log4j/maven-metadata.xml [INFO] Downloading from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/log4j/log4j/maven-metadata.xml [INFO] Downloaded from cloudera-snapshots: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-snapshots/log4j/log4j/maven-metadata.xml (409 B at 2.9 kB/s) [INFO] Downloaded from cloudera-central: http://maven.research-infrastructures.eu/nexus/content/repositories/cloudera-central/log4j/log4j/maven-metadata.xml (451 B at 2.7 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-actionmanager --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-actionmanager --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-actionmanager --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 10 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 10 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-actionmanager --- [INFO] Total Files Processed: 10 in 00:00.049 [INFO] Already Sorted: 10 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-actionmanager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGet.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGet.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGet.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 35 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-actionmanager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-actionmanager --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJobTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.152 s - in eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJobTest [INFO] Running eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest [INFO] Running eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest$SelectNewerAndGetStrategy [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.172 s - in eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest$SelectNewerAndGetStrategy [INFO] Running eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest$MergeFromAndGetStrategy [WARNING] Tests run: 10, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.125 s - in eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest$MergeFromAndGetStrategy [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.305 s - in eu.dnetlib.dhp.actionmanager.promote.MergeAndGetTest [INFO] Running eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest [INFO] Running eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest$GroupTableByIdAndMerge [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.236 s - in eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest$GroupTableByIdAndMerge [INFO] Running eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest$JoinTableWithActionPayloadAndMerge [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.36 s - in eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest$JoinTableWithActionPayloadAndMerge [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.698 s - in eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadFunctionsTest [INFO] Running eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.105 s - in eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest [INFO] [INFO] Results: [INFO] [WARNING] Tests run: 20, Failures: 0, Errors: 0, Skipped: 2 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-actionmanager --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-actionmanager --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 10 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 10 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-actionmanager --- [INFO] Total Files Processed: 10 in 00:00.048 [INFO] Already Sorted: 10 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-actionmanager --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-actionmanager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 35 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-actionmanager --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-actionmanager --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-actionmanager --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/jacoco.exec [INFO] Analyzed bundle 'dhp-actionmanager' with 11 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-actionmanager --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-actionmanager >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-actionmanager --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-actionmanager --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-actionmanager <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-actionmanager --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-graph-mapper >------------------- [INFO] Building dhp-graph-mapper 1.2.5-SNAPSHOT [12/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-mapper --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 25 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: ORCIDAuthorEnricher.scala Correctly formatted: SparkEnrichGraphWithOrcidAuthors.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala Correctly formatted: EnrichOrcidTest.scala Correctly formatted: ORCIDAuthorMatchersTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 17 Scala sources and 51 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/sx/graph/SparkCreateInputGraph.scala:114: abstract type T is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveEntities.scala:88: match may not be exhaustive. It would fail on the following inputs: datasource, organization, project [WARNING] two warnings found [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:104: non-varargs call of varargs method with inexact argument type for last parameter; cast to java.lang.Object for a varargs call cast to java.lang.Object[] for a non-varargs call and to suppress this warning [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 67 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 67 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-mapper --- [INFO] Total Files Processed: 67 in 00:00.163 [INFO] Already Sorted: 67 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 84 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 51 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/hive/GraphHiveTableImporterJob.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/hive/GraphHiveTableImporterJob.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 126 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 8 Scala sources and 16 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-mapper --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/test-classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-mapper --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.oa.graph.merge.MergeGraphTableSparkJobTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.692 s - in eu.dnetlib.dhp.oa.graph.merge.MergeGraphTableSparkJobTest [INFO] Running eu.dnetlib.dhp.oa.graph.hostedbymap.TestPrepare [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.655 s - in eu.dnetlib.dhp.oa.graph.hostedbymap.TestPrepare [INFO] Running eu.dnetlib.dhp.oa.graph.hostedbymap.TestApply [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 707.331 s - in eu.dnetlib.dhp.oa.graph.hostedbymap.TestApply [INFO] Running eu.dnetlib.dhp.oa.graph.hostedbymap.DownloadCsvTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.045 s - in eu.dnetlib.dhp.oa.graph.hostedbymap.DownloadCsvTest [INFO] Running eu.dnetlib.dhp.oa.graph.hostedbymap.TestPreprocess [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 22.24 s - in eu.dnetlib.dhp.oa.graph.hostedbymap.TestPreprocess [INFO] Running eu.dnetlib.dhp.oa.graph.reflections.ReflectionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in eu.dnetlib.dhp.oa.graph.reflections.ReflectionTest [INFO] Running eu.dnetlib.dhp.oa.graph.raw.MigrateDbEntitiesApplicationTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.505 s - in eu.dnetlib.dhp.oa.graph.raw.MigrateDbEntitiesApplicationTest [INFO] Running eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplicationTest [ERROR] Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.578 s <<< FAILURE! - in eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplicationTest [ERROR] eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplicationTest.testMergeResult Time elapsed: 0.567 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: but was: at eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplicationTest.verifyMerge(GenerateEntitiesApplicationTest.java:75) at eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplicationTest.testMergeResult(GenerateEntitiesApplicationTest.java:53) [INFO] Running eu.dnetlib.dhp.oa.graph.raw.PatchRelationApplicationTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.079 s - in eu.dnetlib.dhp.oa.graph.raw.PatchRelationApplicationTest [INFO] Running eu.dnetlib.dhp.oa.graph.raw.common.VerifyNsPrefixPredicateTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in eu.dnetlib.dhp.oa.graph.raw.common.VerifyNsPrefixPredicateTest [INFO] Running eu.dnetlib.dhp.oa.graph.raw.MappersTest [ERROR] Tests run: 32, Failures: 4, Errors: 0, Skipped: 0, Time elapsed: 1.198 s <<< FAILURE! - in eu.dnetlib.dhp.oa.graph.raw.MappersTest [ERROR] eu.dnetlib.dhp.oa.graph.raw.MappersTest.testTextGrid Time elapsed: 0.029 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <1> but was: <3> at eu.dnetlib.dhp.oa.graph.raw.MappersTest.testTextGrid(MappersTest.java:900) [ERROR] eu.dnetlib.dhp.oa.graph.raw.MappersTest.testDataset Time elapsed: 0.024 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <50|doi_________::000374d100a9db469bd42b69dbb40b36> but was: <40|corda_______::e06332dee33bec6c2ba4c98601053229> at eu.dnetlib.dhp.oa.graph.raw.MappersTest.testDataset(MappersTest.java:335) [ERROR] eu.dnetlib.dhp.oa.graph.raw.MappersTest.testNakala Time elapsed: 0.025 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <1> but was: <3> at eu.dnetlib.dhp.oa.graph.raw.MappersTest.testNakala(MappersTest.java:815) [ERROR] eu.dnetlib.dhp.oa.graph.raw.MappersTest.testSoftware Time elapsed: 0.021 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <50|__bioTools__::001321907fcc9f8d020f05230f9d3ddf> but was: <50|doi_________::b453e7b4b2130ace57ff0c3db470a982> at eu.dnetlib.dhp.oa.graph.raw.MappersTest.testSoftware(MappersTest.java:766) [INFO] Running eu.dnetlib.dhp.oa.graph.raw.CopyHdfsOafSparkApplicationTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in eu.dnetlib.dhp.oa.graph.raw.CopyHdfsOafSparkApplicationTest [INFO] Running eu.dnetlib.dhp.oa.graph.group.GroupEntitiesSparkJobTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 s - in eu.dnetlib.dhp.oa.graph.group.GroupEntitiesSparkJobTest [INFO] Running eu.dnetlib.dhp.oa.graph.GraphHiveImporterJobTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 36.861 s - in eu.dnetlib.dhp.oa.graph.GraphHiveImporterJobTest [INFO] Running eu.dnetlib.dhp.oa.graph.resolution.ResolveEntitiesTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.172 s - in eu.dnetlib.dhp.oa.graph.resolution.ResolveEntitiesTest [INFO] Running eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest [ERROR] Tests run: 9, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.141 s <<< FAILURE! - in eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest [ERROR] eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest.testCleaning Time elapsed: 0.025 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <1> but was: <2> at eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest.testCleaning(GraphCleaningFunctionsTest.java:238) [INFO] Running eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJobTest [ERROR] Tests run: 11, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 3,642.945 s <<< FAILURE! - in eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJobTest [ERROR] eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJobTest.testCleaning_publication Time elapsed: 482.019 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <1> but was: <2> at eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJobTest.testCleaning_publication(CleanGraphSparkJobTest.java:330) [INFO] Running eu.dnetlib.dhp.sx.graph.RetrieveDataciteDeltaTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in eu.dnetlib.dhp.sx.graph.RetrieveDataciteDeltaTest [INFO] Running eu.dnetlib.dhp.sx.graph.scholix.ScholixGraphTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 s - in eu.dnetlib.dhp.sx.graph.scholix.ScholixGraphTest [INFO] Running eu.dnetlib.dhp.enrich.orcid.ORCIDAuthorEnricherTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in eu.dnetlib.dhp.enrich.orcid.ORCIDAuthorEnricherTest [INFO] Running eu.dnetlib.dhp.enrich.orcid.ORCIDAuthorMatchersTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in eu.dnetlib.dhp.enrich.orcid.ORCIDAuthorMatchersTest [INFO] [INFO] Results: [INFO] [ERROR] Failures: [ERROR] CleanGraphSparkJobTest.testCleaning_publication:330 expected: <1> but was: <2> [ERROR] GraphCleaningFunctionsTest.testCleaning:238 expected: <1> but was: <2> [ERROR] GenerateEntitiesApplicationTest.testMergeResult:53->verifyMerge:75 expected: but was: [ERROR] MappersTest.testDataset:335 expected: <50|doi_________::000374d100a9db469bd42b69dbb40b36> but was: <40|corda_______::e06332dee33bec6c2ba4c98601053229> [ERROR] MappersTest.testNakala:815 expected: <1> but was: <3> [ERROR] MappersTest.testSoftware:766 expected: <50|__bioTools__::001321907fcc9f8d020f05230f9d3ddf> but was: <50|doi_________::b453e7b4b2130ace57ff0c3db470a982> [ERROR] MappersTest.testTextGrid:900 expected: <1> but was: <3> [INFO] [ERROR] Tests run: 97, Failures: 7, Errors: 0, Skipped: 1 [INFO] [ERROR] There are test failures. Please refer to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/surefire-reports for the individual test results. Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 25 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: ORCIDAuthorEnricher.scala Correctly formatted: SparkEnrichGraphWithOrcidAuthors.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala Correctly formatted: EnrichOrcidTest.scala Correctly formatted: ORCIDAuthorMatchersTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 17 Scala sources and 51 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/classes ... [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/sx/graph/SparkCreateInputGraph.scala:114: abstract type T is unchecked since it is eliminated by erasure [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/scala/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveEntities.scala:88: match may not be exhaustive. It would fail on the following inputs: datasource, organization, project [WARNING] two warnings found [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] : unknown enum constant org.apache.http.annotation.ThreadingBehavior.SAFE reason: class file for org.apache.http.annotation.ThreadingBehavior not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP reason: class file for javax.persistence.TemporalType not found [WARNING] [Warn] : unknown enum constant javax.persistence.TemporalType.TIMESTAMP [WARNING] [Warn] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:104: non-varargs call of varargs method with inexact argument type for last parameter; cast to java.lang.Object for a varargs call cast to java.lang.Object[] for a non-varargs call and to suppress this warning [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java uses or overrides a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 67 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 67 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-mapper --- [INFO] Total Files Processed: 67 in 00:00.157 [INFO] Already Sorted: 67 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 84 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-mapper --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-mapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 126 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 8 Scala sources and 16 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/test-classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-mapper --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-mapper --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-mapper --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/jacoco.exec [INFO] Analyzed bundle 'dhp-graph-mapper' with 276 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-graph-mapper >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-mapper --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 25 were unformatted Details: Correctly formatted: SparkApplyHostedByMapToResult.scala Correctly formatted: Aggregators.scala Correctly formatted: SparkApplyHostedByMapToDatasource.scala Correctly formatted: SparkPrepareHostedByInfoToApply.scala Correctly formatted: SparkProduceHostedByMap.scala Correctly formatted: CopyHdfsOafSparkApplication.scala Correctly formatted: SparkResolveEntities.scala Correctly formatted: SparkResolveRelation.scala Correctly formatted: SparkDataciteToOAF.scala Correctly formatted: SparkConvertDatasetToJsonRDD.scala Correctly formatted: SparkCreateScholix.scala Correctly formatted: SparkConvertObjectToJson.scala Correctly formatted: SparkCreateInputGraph.scala Correctly formatted: SparkCreateSummaryObject.scala Correctly formatted: SparkConvertRDDtoDataset.scala Correctly formatted: ORCIDAuthorEnricher.scala Correctly formatted: SparkEnrichGraphWithOrcidAuthors.scala Correctly formatted: TestApply.scala Correctly formatted: TestPreprocess.scala Correctly formatted: TestPrepare.scala Correctly formatted: ResolveEntitiesTest.scala Correctly formatted: RetrieveDataciteDeltaTest.scala Correctly formatted: ScholixGraphTest.scala Correctly formatted: EnrichOrcidTest.scala Correctly formatted: ORCIDAuthorMatchersTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-mapper --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-mapper --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-mapper --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-graph-mapper <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-graph-mapper --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -----------------< eu.dnetlib.dhp:dhp-dedup-openaire >------------------ [INFO] Building dhp-dedup-openaire 1.2.5-SNAPSHOT [13/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-dedup-openaire --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-dedup-openaire --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 1 were unformatted Details: Correctly formatted: ConnectedComponent.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-dedup-openaire --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 1 Scala source and 23 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 33 [INFO] Successfully formatted: 1 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 32 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-dedup-openaire --- [INFO] Total Files Processed: 33 in 00:00.085 [INFO] Already Sorted: 33 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 23 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-dedup-openaire --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 23 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/IdGenerator.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/IdGenerator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 59 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 10 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-dedup-openaire --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-dedup-openaire --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.oa.dedup.jpath.JsonPathTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.904 s - in eu.dnetlib.dhp.oa.dedup.jpath.JsonPathTest [INFO] Running eu.dnetlib.dhp.oa.dedup.EntityMergerTest [ERROR] Tests run: 6, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 1.208 s <<< FAILURE! - in eu.dnetlib.dhp.oa.dedup.EntityMergerTest [ERROR] eu.dnetlib.dhp.oa.dedup.EntityMergerTest.publicationMergerTest Time elapsed: 0.06 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <2> but was: <0> at eu.dnetlib.dhp.oa.dedup.EntityMergerTest.publicationMergerTest(EntityMergerTest.java:107) [INFO] Running eu.dnetlib.dhp.oa.dedup.SparkStatsTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.819 s - in eu.dnetlib.dhp.oa.dedup.SparkStatsTest [INFO] Running eu.dnetlib.dhp.oa.dedup.IdGeneratorTest [ERROR] Tests run: 3, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.068 s <<< FAILURE! - in eu.dnetlib.dhp.oa.dedup.IdGeneratorTest [ERROR] eu.dnetlib.dhp.oa.dedup.IdGeneratorTest.generateIdTest2 Time elapsed: 0.009 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <50|dedup_wf_001::0829b5191605bdbea36d6502b8c1ce1g> but was: <50|dedup_wf_002::345e5d1b80537b0d0e0a49241ae9e516> at eu.dnetlib.dhp.oa.dedup.IdGeneratorTest.generateIdTest2(IdGeneratorTest.java:81) [INFO] Running eu.dnetlib.dhp.oa.dedup.DatePickerTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in eu.dnetlib.dhp.oa.dedup.DatePickerTest [INFO] Running eu.dnetlib.dhp.oa.dedup.SparkDedupTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.206 s - in eu.dnetlib.dhp.oa.dedup.SparkDedupTest [INFO] Running eu.dnetlib.dhp.oa.dedup.SparkOpenorgsDedupTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.203 s - in eu.dnetlib.dhp.oa.dedup.SparkOpenorgsDedupTest [INFO] Running eu.dnetlib.dhp.oa.dedup.SparkOpenorgsProvisionTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.156 s - in eu.dnetlib.dhp.oa.dedup.SparkOpenorgsProvisionTest [INFO] Running eu.dnetlib.dhp.oa.dedup.SparkPublicationRootsTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.251 s - in eu.dnetlib.dhp.oa.dedup.SparkPublicationRootsTest [INFO] [INFO] Results: [INFO] [ERROR] Failures: [ERROR] EntityMergerTest.publicationMergerTest:107 expected: <2> but was: <0> [ERROR] IdGeneratorTest.generateIdTest2:81 expected: <50|dedup_wf_001::0829b5191605bdbea36d6502b8c1ce1g> but was: <50|dedup_wf_002::345e5d1b80537b0d0e0a49241ae9e516> [INFO] [ERROR] Tests run: 13, Failures: 2, Errors: 0, Skipped: 0 [INFO] [ERROR] There are test failures. Please refer to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/surefire-reports for the individual test results. Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-dedup-openaire --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 1 were unformatted Details: Correctly formatted: ConnectedComponent.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-dedup-openaire --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-dedup-openaire --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 1 Scala source and 23 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 33 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 33 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-dedup-openaire --- [INFO] Total Files Processed: 33 in 00:00.083 [INFO] Already Sorted: 33 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 23 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-dedup-openaire --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-dedup-openaire --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 59 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 10 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-dedup-openaire --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-dedup-openaire --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-dedup-openaire --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/jacoco.exec [INFO] Analyzed bundle 'dhp-dedup-openaire' with 56 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-dedup-openaire --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-dedup-openaire >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-dedup-openaire --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/src/test/scala IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 1 were unformatted Details: Correctly formatted: ConnectedComponent.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-dedup-openaire --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-dedup-openaire --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-dedup-openaire --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-dedup-openaire <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-dedup-openaire --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -------------------< eu.dnetlib.dhp:dhp-enrichment >-------------------- [INFO] Building dhp-enrichment 1.2.5-SNAPSHOT [14/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-enrichment --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-enrichment --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-enrichment --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 97 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 97 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-enrichment --- [INFO] Total Files Processed: 97 in 00:00.151 [INFO] Already Sorted: 97 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 44 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-enrichment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 83 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/classes [WARNING] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java:[37,27] com.sun.media.sound.ModelInstrumentComparator is internal proprietary API and may be removed in a future release [WARNING] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java:[37,27] com.sun.media.sound.ModelInstrumentComparator is internal proprietary API and may be removed in a future release [WARNING] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java:[37,27] com.sun.media.sound.ModelInstrumentComparator is internal proprietary API and may be removed in a future release [WARNING] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java:[37,27] com.sun.media.sound.ModelInstrumentComparator is internal proprietary API and may be removed in a future release [WARNING] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java:[37,27] com.sun.media.sound.ModelInstrumentComparator is internal proprietary API and may be removed in a future release [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/criteria/VerbResolver.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/criteria/VerbResolver.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 130 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-enrichment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 14 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-enrichment --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.resulttoorganizationfrominstrepo.ResultToOrganizationJobTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 32.903 s - in eu.dnetlib.dhp.resulttoorganizationfrominstrepo.ResultToOrganizationJobTest [INFO] Running eu.dnetlib.dhp.projecttoresult.ProjectPropagationJobTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.757 s - in eu.dnetlib.dhp.projecttoresult.ProjectPropagationJobTest [INFO] Running eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest [ERROR] Tests run: 3, Failures: 0, Errors: 3, Skipped: 0, Time elapsed: 0.18 s <<< FAILURE! - in eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest [ERROR] eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.twoUpdatesTest Time elapsed: 0.007 s <<< ERROR! org.apache.commons.cli.UnrecognizedOptionException: Unrecognized option: -hive_metastore_uris at eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.twoUpdatesTest(OrcidPropagationJobTest.java:181) [ERROR] eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.oneUpdateTest Time elapsed: 0.002 s <<< ERROR! org.apache.commons.cli.UnrecognizedOptionException: Unrecognized option: -hive_metastore_uris at eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.oneUpdateTest(OrcidPropagationJobTest.java:114) [ERROR] eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.noUpdateTest Time elapsed: 0.002 s <<< ERROR! org.apache.commons.cli.UnrecognizedOptionException: Unrecognized option: -hive_metastore_uris at eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest.noUpdateTest(OrcidPropagationJobTest.java:75) [INFO] Running eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 10.688 s <<< FAILURE! - in eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest [ERROR] eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest.testSparkResultToCommunityFromProjectJob Time elapsed: 10.516 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest.testSparkResultToCommunityFromProjectJob(ResultToCommunityJobTest.java:76) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest.testSparkResultToCommunityFromProjectJob(ResultToCommunityJobTest.java:76) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 5.0 failed 1 times, most recent failure: Lost task 0.0 in stage 5.0 (TID 5, localhost, executor driver): org.apache.spark.SparkException: Task failed while writing rows. at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:257) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:170) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:169) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Caused by: java.lang.NullPointerException at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeKeyValue(MergeUtils.java:238) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeOafFields(MergeUtils.java:272) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeOafEntityFields(MergeUtils.java:288) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeResult(MergeUtils.java:340) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeDataset(MergeUtils.java:585) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.mergeEntities(MergeUtils.java:66) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.merge(MergeUtils.java:39) at eu.dnetlib.dhp.schema.oaf.utils.MergeUtils.checkedMerge(MergeUtils.java:30) at eu.dnetlib.dhp.resulttocommunityfromproject.SparkResultToCommunityFromProject.lambda$resultCommunityFn$4cf2c3cb$1(SparkResultToCommunityFromProject.java:164) at org.apache.spark.sql.execution.MapElementsExec$$anonfun$6.apply(objects.scala:229) at org.apache.spark.sql.execution.MapElementsExec$$anonfun$7$$anonfun$apply$1.apply(objects.scala:236) at org.apache.spark.sql.execution.MapElementsExec$$anonfun$7$$anonfun$apply$1.apply(objects.scala:236) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:245) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:242) at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1439) at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:248) ... 10 more Driver stacktrace: at eu.dnetlib.dhp.resulttocommunityfromproject.ResultToCommunityJobTest.testSparkResultToCommunityFromProjectJob(ResultToCommunityJobTest.java:76) Caused by: org.apache.spark.SparkException: Task failed while writing rows. Caused by: java.lang.NullPointerException [INFO] Running eu.dnetlib.dhp.countrypropagation.ResultCountryPreparationTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.625 s - in eu.dnetlib.dhp.countrypropagation.ResultCountryPreparationTest [INFO] Running eu.dnetlib.dhp.countrypropagation.DatasourceCountryPreparationTest [ERROR] Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 5.637 s <<< FAILURE! - in eu.dnetlib.dhp.countrypropagation.DatasourceCountryPreparationTest [ERROR] eu.dnetlib.dhp.countrypropagation.DatasourceCountryPreparationTest.testPrepareDatasourceCountry Time elapsed: 5.506 s <<< FAILURE! org.opentest4j.AssertionFailedError: expected: <3> but was: <2> at eu.dnetlib.dhp.countrypropagation.DatasourceCountryPreparationTest.testPrepareDatasourceCountry(DatasourceCountryPreparationTest.java:78) [INFO] Running eu.dnetlib.dhp.countrypropagation.CountryPropagationJobTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.435 s - in eu.dnetlib.dhp.countrypropagation.CountryPropagationJobTest [INFO] Running eu.dnetlib.dhp.resulttocommunityfromsemrel.ResultToCommunityJobTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 20.53 s - in eu.dnetlib.dhp.resulttocommunityfromsemrel.ResultToCommunityJobTest [INFO] Running eu.dnetlib.dhp.entitytoorganizationfromsemrel.StepActionsTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 43.224 s - in eu.dnetlib.dhp.entitytoorganizationfromsemrel.StepActionsTest [INFO] Running eu.dnetlib.dhp.entitytoorganizationfromsemrel.PrepareInfoJobTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 35.376 s - in eu.dnetlib.dhp.entitytoorganizationfromsemrel.PrepareInfoJobTest [INFO] Running eu.dnetlib.dhp.entitytoorganizationfromsemrel.SparkJobTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 545.104 s - in eu.dnetlib.dhp.entitytoorganizationfromsemrel.SparkJobTest [INFO] Running eu.dnetlib.dhp.bulktag.BulkTagJobTest [ERROR] Tests run: 22, Failures: 0, Errors: 22, Skipped: 0, Time elapsed: 0.181 s <<< FAILURE! - in eu.dnetlib.dhp.bulktag.BulkTagJobTest [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.galaxyOtherTest Time elapsed: 0.005 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.galaxyOtherTest(BulkTagJobTest.java:1188) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectDatasourceTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectDatasourceTest(BulkTagJobTest.java:596) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterSoftwareTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterSoftwareTest(BulkTagJobTest.java:1511) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectNoPreviousContextTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectNoPreviousContextTest(BulkTagJobTest.java:153) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectPreviousContextNoProvenanceTest Time elapsed: 0.022 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required option: bu at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectPreviousContextNoProvenanceTest(BulkTagJobTest.java:255) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.datasourceTag Time elapsed: 0.013 s <<< ERROR! java.io.FileNotFoundException: Destination exists and is not a directory: /tmp/BulkTagJobTest3519248121518987665/data/bulktagging/protoMap/pathMap at eu.dnetlib.dhp.bulktag.BulkTagJobTest.datasourceTag(BulkTagJobTest.java:410) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterOtherTest Time elapsed: 0.002 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterOtherTest(BulkTagJobTest.java:1466) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagByDatasourceTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required option: nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagByDatasourceTest(BulkTagJobTest.java:337) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagDatasourcewithConstraintsTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagDatasourcewithConstraintsTest(BulkTagJobTest.java:824) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterDatasetTest Time elapsed: 0.002 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.twitterDatasetTest(BulkTagJobTest.java:1426) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagOtherJupyter Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagOtherJupyter(BulkTagJobTest.java:867) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.pubdateTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.pubdateTest(BulkTagJobTest.java:1699) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagByZenodoCommunityTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagByZenodoCommunityTest(BulkTagJobTest.java:475) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.prova Time elapsed: 0.013 s <<< ERROR! java.io.FileNotFoundException: Destination exists and is not a directory: /tmp/BulkTagJobTest3519248121518987665/data/bulktagging/protoMap/pathMap at eu.dnetlib.dhp.bulktag.BulkTagJobTest.prova(BulkTagJobTest.java:1788) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.noUpdatesTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.noUpdatesTest(BulkTagJobTest.java:115) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.galaxySoftwareTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.galaxySoftwareTest(BulkTagJobTest.java:1306) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.newConfTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.newConfTest(BulkTagJobTest.java:1661) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagSoftwareJupyter Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagSoftwareJupyter(BulkTagJobTest.java:970) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.removeTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.removeTest(BulkTagJobTest.java:1620) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.EoscContextTagTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.EoscContextTagTest(BulkTagJobTest.java:1548) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagDatasetJupyter Time elapsed: 0 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulkTagDatasetJupyter(BulkTagJobTest.java:921) [ERROR] eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectDatasourceZenodoCommunityTest Time elapsed: 0.001 s <<< ERROR! org.apache.commons.cli.MissingOptionException: Missing required options: bu, nn at eu.dnetlib.dhp.bulktag.BulkTagJobTest.bulktagBySubjectDatasourceZenodoCommunityTest(BulkTagJobTest.java:723) [INFO] Running eu.dnetlib.dhp.bulktag.CommunityConfigurationFactoryTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.701 s - in eu.dnetlib.dhp.bulktag.CommunityConfigurationFactoryTest [INFO] Running eu.dnetlib.dhp.resulttocommunityfromorganization.ResultToCommunityJobTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 29.977 s - in eu.dnetlib.dhp.resulttocommunityfromorganization.ResultToCommunityJobTest [INFO] [INFO] Results: [INFO] [ERROR] Failures: [ERROR] DatasourceCountryPreparationTest.testPrepareDatasourceCountry:78 expected: <3> but was: <2> [ERROR] Errors: [ERROR] BulkTagJobTest.EoscContextTagTest:1548 » MissingOption Missing required option... [ERROR] BulkTagJobTest.bulkTagDatasetJupyter:921 » MissingOption Missing required opti... [ERROR] BulkTagJobTest.bulkTagOtherJupyter:867 » MissingOption Missing required option... [ERROR] BulkTagJobTest.bulkTagSoftwareJupyter:970 » MissingOption Missing required opt... [ERROR] BulkTagJobTest.bulktagByDatasourceTest:337 » MissingOption Missing required op... [ERROR] BulkTagJobTest.bulktagBySubjectDatasourceTest:596 » MissingOption Missing requ... [ERROR] BulkTagJobTest.bulktagBySubjectDatasourceZenodoCommunityTest:723 » MissingOption [ERROR] BulkTagJobTest.bulktagBySubjectNoPreviousContextTest:153 » MissingOption Missi... [ERROR] BulkTagJobTest.bulktagBySubjectPreviousContextNoProvenanceTest:255 » MissingOption [ERROR] BulkTagJobTest.bulktagByZenodoCommunityTest:475 » MissingOption Missing requir... [ERROR] BulkTagJobTest.bulktagDatasourcewithConstraintsTest:824 » MissingOption Missin... [ERROR] BulkTagJobTest.datasourceTag:410 » FileNotFound Destination exists and is not ... [ERROR] BulkTagJobTest.galaxyOtherTest:1188 » MissingOption Missing required options: ... [ERROR] BulkTagJobTest.galaxySoftwareTest:1306 » MissingOption Missing required option... [ERROR] BulkTagJobTest.newConfTest:1661 » MissingOption Missing required options: bu, ... [ERROR] BulkTagJobTest.noUpdatesTest:115 » MissingOption Missing required options: bu,... [ERROR] BulkTagJobTest.prova:1788 » FileNotFound Destination exists and is not a direc... [ERROR] BulkTagJobTest.pubdateTest:1699 » MissingOption Missing required options: bu, ... [ERROR] BulkTagJobTest.removeTest:1620 » MissingOption Missing required options: bu, n... [ERROR] BulkTagJobTest.twitterDatasetTest:1426 » MissingOption Missing required option... [ERROR] BulkTagJobTest.twitterOtherTest:1466 » MissingOption Missing required options:... [ERROR] BulkTagJobTest.twitterSoftwareTest:1511 » MissingOption Missing required optio... [ERROR] OrcidPropagationJobTest.noUpdateTest:75 » UnrecognizedOption Unrecognized opti... [ERROR] OrcidPropagationJobTest.oneUpdateTest:114 » UnrecognizedOption Unrecognized op... [ERROR] OrcidPropagationJobTest.twoUpdatesTest:181 » UnrecognizedOption Unrecognized o... [ERROR] ResultToCommunityJobTest.testSparkResultToCommunityFromProjectJob:76 » Runtime [INFO] [ERROR] Tests run: 56, Failures: 1, Errors: 26, Skipped: 0 [INFO] [ERROR] There are test failures. Please refer to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/surefire-reports for the individual test results. Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-enrichment --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-enrichment --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 97 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 97 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-enrichment --- [INFO] Total Files Processed: 97 in 00:00.220 [INFO] Already Sorted: 97 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 44 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-enrichment --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-enrichment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 130 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-enrichment --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-enrichment --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-enrichment --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/jacoco.exec [INFO] Analyzed bundle 'dhp-enrichment' with 83 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-enrichment --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-enrichment >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-enrichment --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-enrichment --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-enrichment <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-enrichment --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -----------------< eu.dnetlib.dhp:dhp-graph-provision >----------------- [INFO] Building dhp-graph-provision 1.2.5-SNAPSHOT [15/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-graph-provision --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-provision --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-provision --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-provision --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 34 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Some input files use or override a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 47 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 47 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-provision --- [INFO] Total Files Processed: 47 in 00:00.125 [INFO] Already Sorted: 47 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 24 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 34 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Some input files use or override a deprecated API. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java: Recompile with -Xlint:deprecation for details. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlSerializationUtils.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlSerializationUtils.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 120 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 13 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-provision --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-provision --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.oa.provision.XmlRecordFactoryTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.449 s - in eu.dnetlib.dhp.oa.provision.XmlRecordFactoryTest [INFO] Running eu.dnetlib.dhp.oa.provision.SortableRelationKeyTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in eu.dnetlib.dhp.oa.provision.SortableRelationKeyTest [INFO] Running eu.dnetlib.dhp.oa.provision.XmlIndexingJobTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 34.587 s - in eu.dnetlib.dhp.oa.provision.XmlIndexingJobTest [INFO] Running eu.dnetlib.dhp.oa.provision.IndexRecordTransformerTest [INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.769 s - in eu.dnetlib.dhp.oa.provision.IndexRecordTransformerTest [INFO] Running eu.dnetlib.dhp.oa.provision.PrepareRelationsJobTest [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.233 s - in eu.dnetlib.dhp.oa.provision.PrepareRelationsJobTest [INFO] Running eu.dnetlib.dhp.oa.provision.SolrConfigTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 35.416 s - in eu.dnetlib.dhp.oa.provision.SolrConfigTest [INFO] Running eu.dnetlib.dhp.oa.provision.SolrConfigExploreTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.054 s - in eu.dnetlib.dhp.oa.provision.SolrConfigExploreTest [INFO] Running eu.dnetlib.dhp.oa.provision.EOSCFuture_Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 s - in eu.dnetlib.dhp.oa.provision.EOSCFuture_Test [INFO] Running eu.dnetlib.dhp.oa.provision.JoinedEntityTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in eu.dnetlib.dhp.oa.provision.JoinedEntityTest [INFO] Running eu.dnetlib.dhp.oa.provision.SolrAdminApplicationTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 31.561 s - in eu.dnetlib.dhp.oa.provision.SolrAdminApplicationTest [INFO] Running eu.dnetlib.dhp.oa.provision.SolrRecordDumpJobTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.848 s - in eu.dnetlib.dhp.oa.provision.SolrRecordDumpJobTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 32, Failures: 0, Errors: 0, Skipped: 0 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-provision --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-provision --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-provision --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 34 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Some input files use or override a deprecated API. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/RelationComparator.java:-1: Recompile with -Xlint:deprecation for details. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Some input files use unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase2.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 47 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 47 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-graph-provision --- [INFO] Total Files Processed: 47 in 00:00.129 [INFO] Already Sorted: 47 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 24 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-graph-provision --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-graph-provision --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 120 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 13 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-graph-provision --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-graph-provision --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-graph-provision --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/jacoco.exec [INFO] Analyzed bundle 'dhp-graph-provision' with 40 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-graph-provision --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-graph-provision >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-graph-provision --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-graph-provision --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-graph-provision --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-graph-provision --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-graph-provision <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-graph-provision --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-blacklist >-------------------- [INFO] Building dhp-blacklist 1.2.5-SNAPSHOT [16/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-blacklist --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-blacklist --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-blacklist --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 5 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 5 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-blacklist --- [INFO] Total Files Processed: 5 in 00:00.020 [INFO] Already Sorted: 5 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-blacklist --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-blacklist --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-blacklist --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.blacklist.BlacklistRelationTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 s - in eu.dnetlib.dhp.blacklist.BlacklistRelationTest [INFO] Running eu.dnetlib.dhp.blacklist.BlackListTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 31.372 s - in eu.dnetlib.dhp.blacklist.BlackListTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-blacklist --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-blacklist --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 5 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 5 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-blacklist --- [INFO] Total Files Processed: 5 in 00:00.023 [INFO] Already Sorted: 5 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-blacklist --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-blacklist --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-blacklist --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-blacklist --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-blacklist --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/jacoco.exec [INFO] Analyzed bundle 'dhp-blacklist' with 3 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-blacklist --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-blacklist >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-blacklist --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-blacklist --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-blacklist <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-blacklist --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-stats-actionsets >----------------- [INFO] Building dhp-stats-actionsets 1.2.5-SNAPSHOT [17/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-actionsets --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-actionsets --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-actionsets --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 2 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 2 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-actionsets --- [INFO] Total Files Processed: 2 in 00:00.012 [INFO] Already Sorted: 2 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-actionsets --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/java/eu/dnetlib/dhp/actionmanager/stats_actionsets/StatsAtomicActionsJob.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/java/eu/dnetlib/dhp/actionmanager/stats_actionsets/StatsAtomicActionsJob.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/java/eu/dnetlib/dhp/actionmanager/stats_actionsets/StatsAtomicActionsJob.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-actionsets --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-actionsets --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-actionsets --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-actionsets --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 2 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 2 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-actionsets --- [INFO] Total Files Processed: 2 in 00:00.012 [INFO] Already Sorted: 2 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-actionsets --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-actionsets --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-actionsets --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-actionsets --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-actionsets --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-actionsets --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/dhp-stats-actionsets-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-actionsets >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-actionsets --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-actionsets --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-actionsets <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-actionsets --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/dhp-stats-actionsets-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-stats-hist-snaps >----------------- [INFO] Building dhp-stats-hist-snaps 1.2.5-SNAPSHOT [18/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-hist-snaps --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-hist-snaps --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-hist-snaps --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-hist-snaps --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-hist-snaps --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-hist-snaps --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-hist-snaps --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-hist-snaps --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-hist-snaps --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-hist-snaps --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-hist-snaps --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-hist-snaps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-hist-snaps --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-hist-snaps --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-hist-snaps --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-hist-snaps --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/dhp-stats-hist-snaps-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-hist-snaps >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-hist-snaps --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-hist-snaps --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-hist-snaps <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-hist-snaps --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/dhp-stats-hist-snaps-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ---------------< eu.dnetlib.dhp:dhp-stats-monitor-irish >--------------- [INFO] Building dhp-stats-monitor-irish 1.2.5-SNAPSHOT [19/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-monitor-irish --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-irish --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-irish --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-monitor-irish --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-monitor-irish --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-monitor-irish --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-monitor-irish --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-irish --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-irish --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-monitor-irish --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-monitor-irish --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-monitor-irish --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-monitor-irish --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-monitor-irish --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-monitor-irish --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-monitor-irish --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/dhp-stats-monitor-irish-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-monitor-irish >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-irish --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-irish --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-monitor-irish <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-monitor-irish --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/dhp-stats-monitor-irish-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------< eu.dnetlib.dhp:dhp-stats-monitor-update >--------------- [INFO] Building dhp-stats-monitor-update 1.2.5-SNAPSHOT [20/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-monitor-update --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-monitor-update --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-monitor-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-monitor-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-monitor-update --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-monitor-update --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-monitor-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-monitor-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-monitor-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-monitor-update --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-monitor-update --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-monitor-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/dhp-stats-monitor-update-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-monitor-update >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-monitor-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-monitor-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-monitor-update <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-monitor-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/dhp-stats-monitor-update-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-stats-update >------------------- [INFO] Building dhp-stats-update 1.2.5-SNAPSHOT [21/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-update --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-update --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 39 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-update --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-update --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 39 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-update --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-update --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-update >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-update <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-stats-promote >------------------ [INFO] Building dhp-stats-promote 1.2.5-SNAPSHOT [22/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-stats-promote --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-promote --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-promote --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-promote --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-promote --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-promote --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-promote --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-stats-promote --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-stats-promote --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-stats-promote --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-stats-promote --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-stats-promote --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-stats-promote --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-stats-promote >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-stats-promote --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-stats-promote --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-stats-promote <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-stats-promote --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-usage-stats-build >---------------- [INFO] Building dhp-usage-stats-build 1.2.5-SNAPSHOT [23/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-usage-stats-build --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-stats-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-stats-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-stats-build --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 7 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 7 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-stats-build --- [INFO] Total Files Processed: 7 in 00:00.025 [INFO] Already Sorted: 7 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-stats-build --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-stats-build --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-stats-build --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-stats-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-stats-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-stats-build --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 7 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 7 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-stats-build --- [INFO] Total Files Processed: 7 in 00:00.044 [INFO] Already Sorted: 7 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-stats-build --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-stats-build --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-stats-build --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-stats-build --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-usage-stats-build --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-usage-stats-build --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-usage-stats-build >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-stats-build --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-stats-build --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-stats-build --- [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-usage-stats-build <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-usage-stats-build --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------< eu.dnetlib.dhp:dhp-usage-raw-data-update >-------------- [INFO] Building dhp-usage-raw-data-update 1.2.5-SNAPSHOT [24/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-usage-raw-data-update --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-raw-data-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-raw-data-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-raw-data-update --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 10 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 10 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-raw-data-update --- [INFO] Total Files Processed: 10 in 00:00.077 [INFO] Already Sorted: 10 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-raw-data-update --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/main/java/eu/dnetlib/oa/graph/usagerawdata/export/ReadCounterRobotsList.java: Some input files use unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/main/java/eu/dnetlib/oa/graph/usagerawdata/export/ReadCounterRobotsList.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-raw-data-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-raw-data-update --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-raw-data-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-raw-data-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-raw-data-update --- [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 10 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 10 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-usage-raw-data-update --- [INFO] Total Files Processed: 10 in 00:00.069 [INFO] Already Sorted: 10 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ dhp-usage-raw-data-update --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-usage-raw-data-update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ dhp-usage-raw-data-update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-usage-raw-data-update --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-usage-raw-data-update --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-usage-raw-data-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-usage-raw-data-update >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-usage-raw-data-update --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-usage-raw-data-update --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- git-commit-id-plugin:2.1.15:revision (default) @ dhp-usage-raw-data-update --- [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-usage-raw-data-update <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-usage-raw-data-update --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ------------------< eu.dnetlib.dhp:dhp-broker-events >------------------ [INFO] Building dhp-broker-events 1.2.5-SNAPSHOT [25/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] Downloading from dnet45-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-release/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet45-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet45-bootstrap-snapshot/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-release: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-release/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet5-bootstrap-snapshot: https://maven.d4science.org/nexus/content/repositories/dnet5-bootstrap-snapshot/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from cloudera: https://repository.cloudera.com/artifactory/cloudera-repos/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from dnet-deps: https://maven.d4science.org/nexus/content/repositories/dnet-deps/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloaded from dnet45-snapshots: https://maven.d4science.org/nexus/content/repositories/dnet45-snapshots/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml (1.6 kB at 11 kB/s) [INFO] Downloading from maven-restlet: https://maven.restlet.talend.com/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloaded from dnet45-releases: https://maven.d4science.org/nexus/content/repositories/dnet45-releases/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml (1.3 kB at 6.5 kB/s) [INFO] Downloading from conjars: https://conjars.wensel.net/repo/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] Downloading from central: https://repo.maven.apache.org/maven2/eu/dnetlib/dhp/dnet-openaire-broker-common/maven-metadata.xml [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-broker-events --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-broker-events --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-broker-events --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 87 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 87 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-broker-events --- [INFO] Total Files Processed: 87 in 00:00.131 [INFO] Already Sorted: 87 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 20 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-broker-events --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 80 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-broker-events --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-broker-events --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.broker.oa.util.ConversionUtilsTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 s - in eu.dnetlib.dhp.broker.oa.util.ConversionUtilsTest [INFO] Running eu.dnetlib.dhp.broker.oa.util.SubscriptionUtilsTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in eu.dnetlib.dhp.broker.oa.util.SubscriptionUtilsTest [INFO] Running eu.dnetlib.dhp.broker.oa.util.TrustUtilsTest [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.686 s - in eu.dnetlib.dhp.broker.oa.util.TrustUtilsTest [INFO] Running eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcherTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.744 s - in eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcherTest [INFO] Running eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPublicationDateTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPublicationDateTest [INFO] Running eu.dnetlib.dhp.broker.oa.GenerateNotificationsJobTest [WARNING] Tests run: 7, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 1.898 s - in eu.dnetlib.dhp.broker.oa.GenerateNotificationsJobTest [INFO] [INFO] Results: [INFO] [WARNING] Tests run: 36, Failures: 0, Errors: 0, Skipped: 1 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-broker-events --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-broker-events --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 87 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 87 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-broker-events --- [INFO] Total Files Processed: 87 in 00:00.125 [INFO] Already Sorted: 87 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 20 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-broker-events --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-broker-events --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-broker-events --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-broker-events --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-broker-events --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/jacoco.exec [INFO] Analyzed bundle 'dhp-broker-events' with 81 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-broker-events --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-broker-events >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-broker-events --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-broker-events --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-broker-events <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-broker-events --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] --------------------< eu.dnetlib.dhp:dhp-doiboost >--------------------- [INFO] Building dhp-doiboost 1.2.5-SNAPSHOT [26/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-doiboost --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-doiboost --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 22 were unformatted Details: Correctly formatted: DoiBoostMappingUtil.scala Correctly formatted: SparkGenerateDoiBoost.scala Correctly formatted: ORCIDToOAF.scala Correctly formatted: SparkPreprocessORCID.scala Correctly formatted: SparkConvertORCIDToOAF.scala Correctly formatted: GenerateCrossrefDataset.scala Correctly formatted: Crossref2Oaf.scala Correctly formatted: CrossrefDataset.scala Correctly formatted: SparkMapDumpIntoOAF.scala Correctly formatted: UnpackCrtossrefEntries.scala Correctly formatted: SparkMapUnpayWallToOAF.scala Correctly formatted: UnpayWallToOAF.scala Correctly formatted: SparkGenerateDOIBoostActionSet.scala Correctly formatted: SparkImportMagIntoDataset.scala Correctly formatted: MagDataModel.scala Correctly formatted: SparkProcessMAG.scala Correctly formatted: MappingORCIDToOAFTest.scala Correctly formatted: DoiBoostHostedByMapTest.scala Correctly formatted: NormalizeDoiTest.scala Correctly formatted: CrossrefMappingTest.scala Correctly formatted: UnpayWallMappingTest.scala Correctly formatted: MAGMappingTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-doiboost --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-doiboost --- [INFO] Add Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/scala [INFO] Add Test Source directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/test/scala [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 16 Scala sources and 32 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 37 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 37 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-doiboost --- [INFO] Total Files Processed: 37 in 00:00.164 [INFO] Already Sorted: 37 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 37 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-doiboost --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 32 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 48 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 6 Scala sources and 5 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/test-classes ... [WARNING] [Warn] : there was one feature warning; re-run with -feature for details [WARNING] one warning found [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-doiboost --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-doiboost --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.doiboost.NormalizeDOITest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.274 s - in eu.dnetlib.dhp.doiboost.NormalizeDOITest [INFO] Running eu.dnetlib.dhp.doiboost.orcid.MappingORCIDToOAFTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.575 s - in eu.dnetlib.dhp.doiboost.orcid.MappingORCIDToOAFTest [INFO] Running eu.dnetlib.dhp.doiboost.DoiBoostHostedByMapTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in eu.dnetlib.dhp.doiboost.DoiBoostHostedByMapTest [INFO] Running eu.dnetlib.dhp.doiboost.crossref.CrossrefMappingTest [INFO] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.842 s - in eu.dnetlib.dhp.doiboost.crossref.CrossrefMappingTest [INFO] Running eu.dnetlib.dhp.doiboost.uw.UnpayWallMappingTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.375 s - in eu.dnetlib.dhp.doiboost.uw.UnpayWallMappingTest [INFO] Running eu.dnetlib.dhp.doiboost.mag.MAGMappingTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.638 s - in eu.dnetlib.dhp.doiboost.mag.MAGMappingTest [INFO] Running eu.dnetlib.doiboost.orcidnodoi.xml.OrcidNoDoiTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 s - in eu.dnetlib.doiboost.orcidnodoi.xml.OrcidNoDoiTest [INFO] Running eu.dnetlib.doiboost.orcidnodoi.PublicationToOafTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.002 s - in eu.dnetlib.doiboost.orcidnodoi.PublicationToOafTest [INFO] Running eu.dnetlib.doiboost.orcid.xml.XMLRecordParserTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in eu.dnetlib.doiboost.orcid.xml.XMLRecordParserTest [INFO] Running eu.dnetlib.doiboost.orcid.OrcidClientTest [WARNING] Tests run: 15, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 41.794 s - in eu.dnetlib.doiboost.orcid.OrcidClientTest [INFO] [INFO] Results: [INFO] [WARNING] Tests run: 69, Failures: 0, Errors: 0, Skipped: 3 [INFO] [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-doiboost --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 22 were unformatted Details: Correctly formatted: DoiBoostMappingUtil.scala Correctly formatted: SparkGenerateDoiBoost.scala Correctly formatted: ORCIDToOAF.scala Correctly formatted: SparkPreprocessORCID.scala Correctly formatted: SparkConvertORCIDToOAF.scala Correctly formatted: GenerateCrossrefDataset.scala Correctly formatted: Crossref2Oaf.scala Correctly formatted: CrossrefDataset.scala Correctly formatted: SparkMapDumpIntoOAF.scala Correctly formatted: UnpackCrtossrefEntries.scala Correctly formatted: SparkMapUnpayWallToOAF.scala Correctly formatted: UnpayWallToOAF.scala Correctly formatted: SparkGenerateDOIBoostActionSet.scala Correctly formatted: SparkImportMagIntoDataset.scala Correctly formatted: MagDataModel.scala Correctly formatted: SparkProcessMAG.scala Correctly formatted: MappingORCIDToOAFTest.scala Correctly formatted: DoiBoostHostedByMapTest.scala Correctly formatted: NormalizeDoiTest.scala Correctly formatted: CrossrefMappingTest.scala Correctly formatted: UnpayWallMappingTest.scala Correctly formatted: MAGMappingTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-doiboost --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-doiboost --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 16 Scala sources and 32 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/classes ... [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java uses unchecked or unsafe operations. [INFO] [Info] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java:-1: Recompile with -Xlint:unchecked for details. [INFO] Done compiling. [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 37 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 37 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-doiboost --- [INFO] Total Files Processed: 37 in 00:00.108 [INFO] Already Sorted: 37 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 37 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-doiboost --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-doiboost --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 48 resources [INFO] [INFO] --- scala-maven-plugin:4.0.1:testCompile (scala-test-compile) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [INFO] Compiling 5 Java sources to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/test-classes ... [INFO] Done compiling. [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-doiboost --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-doiboost --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-doiboost --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/jacoco.exec [INFO] Analyzed bundle 'dhp-doiboost' with 392 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-doiboost --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-doiboost >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-doiboost --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf IndentOperator: top-level presets deprecated; use 'preset' subsection DanglingParentheses: top-level presets deprecated; use 'preset' subsection [INFO] parsed config (v2.7.5): /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [INFO] Scalafmt results: 0 of 22 were unformatted Details: Correctly formatted: DoiBoostMappingUtil.scala Correctly formatted: SparkGenerateDoiBoost.scala Correctly formatted: ORCIDToOAF.scala Correctly formatted: SparkPreprocessORCID.scala Correctly formatted: SparkConvertORCIDToOAF.scala Correctly formatted: GenerateCrossrefDataset.scala Correctly formatted: Crossref2Oaf.scala Correctly formatted: CrossrefDataset.scala Correctly formatted: SparkMapDumpIntoOAF.scala Correctly formatted: UnpackCrtossrefEntries.scala Correctly formatted: SparkMapUnpayWallToOAF.scala Correctly formatted: UnpayWallToOAF.scala Correctly formatted: SparkGenerateDOIBoostActionSet.scala Correctly formatted: SparkImportMagIntoDataset.scala Correctly formatted: MagDataModel.scala Correctly formatted: SparkProcessMAG.scala Correctly formatted: MappingORCIDToOAFTest.scala Correctly formatted: DoiBoostHostedByMapTest.scala Correctly formatted: NormalizeDoiTest.scala Correctly formatted: CrossrefMappingTest.scala Correctly formatted: UnpayWallMappingTest.scala Correctly formatted: MAGMappingTest.scala [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-doiboost --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- scala-maven-plugin:4.0.1:add-source (scala-compile-first) @ dhp-doiboost --- [INFO] [INFO] --- scala-maven-plugin:4.0.1:compile (scala-compile-first) @ dhp-doiboost --- [INFO] Using incremental compilation using Mixed compile order [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-doiboost <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-doiboost --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] ----------------< eu.dnetlib.dhp:dhp-impact-indicators >---------------- [INFO] Building dhp-impact-indicators 1.2.5-SNAPSHOT [27/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-impact-indicators --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-impact-indicators --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-impact-indicators --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-impact-indicators --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 9 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-impact-indicators --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-impact-indicators --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-impact-indicators --- [INFO] No tests to run. [JENKINS] Recording test results[INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-impact-indicators --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-impact-indicators --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 0 [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-impact-indicators --- [INFO] Total Files Processed: 0 in 00:00.000 [INFO] Already Sorted: 0 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 9 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-impact-indicators --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-impact-indicators --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-impact-indicators --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-impact-indicators --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-impact-indicators --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-scm-plugin:1.8.1:checkout (checkout-bip-ranker) @ dhp-impact-indicators --- [INFO] Removing /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker [INFO] Executing: /bin/sh -c cd /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app && git clone --branch v1.0.0 https://github.com/athenarc/Bip-Ranker.git /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker [INFO] Working directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app [INFO] Executing: /bin/sh -c cd /tmp && git ls-remote https://github.com/athenarc/Bip-Ranker.git [INFO] Working directory: /tmp [INFO] Executing: /bin/sh -c cd /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker && git fetch https://github.com/athenarc/Bip-Ranker.git [INFO] Working directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker [INFO] Executing: /bin/sh -c cd /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker && git checkout v1.0.0 [INFO] Working directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker [INFO] Executing: /bin/sh -c cd /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker && git ls-files [INFO] Working directory: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/oozie-package/oozie_app/bip-ranker [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-impact-indicators --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/dhp-impact-indicators-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-impact-indicators >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-impact-indicators --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-impact-indicators --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-impact-indicators <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-impact-indicators --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/dhp-impact-indicators-1.2.5-SNAPSHOT-sources.jar [INFO] [INFO] -----------------------< eu.dnetlib.dhp:dhp-swh >----------------------- [INFO] Building dhp-swh 1.2.5-SNAPSHOT [28/28] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ dhp-swh --- [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-swh --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-swh --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 11 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 11 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-swh --- [INFO] Total Files Processed: 11 in 00:00.033 [INFO] Already Sorted: 11 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-swh --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/classes [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/java/eu/dnetlib/dhp/swh/PrepareSWHActionsets.java: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/java/eu/dnetlib/dhp/swh/PrepareSWHActionsets.java uses unchecked or unsafe operations. [INFO] /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/java/eu/dnetlib/dhp/swh/PrepareSWHActionsets.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-swh --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-swh --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running eu.dnetlib.dhp.swh.ArchiveRepositoryURLsTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.492 s <<< FAILURE! - in eu.dnetlib.dhp.swh.ArchiveRepositoryURLsTest [ERROR] eu.dnetlib.dhp.swh.ArchiveRepositoryURLsTest.testArchive Time elapsed: 0.464 s <<< ERROR! java.lang.NullPointerException at eu.dnetlib.dhp.swh.ArchiveRepositoryURLsTest.testArchive(ArchiveRepositoryURLsTest.java:32) [INFO] Running eu.dnetlib.dhp.swh.SWHConnectionTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.12 s - in eu.dnetlib.dhp.swh.SWHConnectionTest [INFO] Running eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest [ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 13.448 s <<< FAILURE! - in eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest [ERROR] eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest.testRun Time elapsed: 11.018 s <<< ERROR! java.lang.RuntimeException: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest.testRun(PrepareSWHActionsetsTest.java:88) Caused by: org.apache.spark.SparkException: Job aborted. at eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest.testRun(PrepareSWHActionsetsTest.java:88) Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 1 times, most recent failure: Lost task 0.0 in stage 1.0 (TID 1, localhost, executor driver): java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! at org.apache.hadoop.io.SequenceFile$Writer.(SequenceFile.java:1150) at org.apache.hadoop.io.SequenceFile$BlockCompressWriter.(SequenceFile.java:1509) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:275) at org.apache.hadoop.io.SequenceFile.createWriter(SequenceFile.java:528) at org.apache.hadoop.mapred.SequenceFileOutputFormat.getRecordWriter(SequenceFileOutputFormat.java:63) at org.apache.spark.internal.io.HadoopMapRedWriteConfigUtil.initWriter(SparkHadoopWriter.scala:228) at org.apache.spark.internal.io.SparkHadoopWriter$.org$apache$spark$internal$io$SparkHadoopWriter$$executeTask(SparkHadoopWriter.scala:122) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:83) at org.apache.spark.internal.io.SparkHadoopWriter$$anonfun$3.apply(SparkHadoopWriter.scala:78) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Driver stacktrace: at eu.dnetlib.dhp.swh.PrepareSWHActionsetsTest.testRun(PrepareSWHActionsetsTest.java:88) Caused by: java.lang.IllegalArgumentException: SequenceFile doesn't work with GzipCodec without native-hadoop code! [INFO] [INFO] Results: [INFO] [ERROR] Errors: [ERROR] ArchiveRepositoryURLsTest.testArchive:32 » NullPointer [ERROR] PrepareSWHActionsetsTest.testRun:88 » Runtime org.apache.spark.SparkException:... [INFO] [ERROR] Tests run: 4, Failures: 0, Errors: 2, Skipped: 0 [INFO] [ERROR] There are test failures. Please refer to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/surefire-reports for the individual test results. Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [JENKINS] Recording test results [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-swh --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-swh --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [INFO] [INFO] --- formatter-maven-plugin:2.11.0:format (default) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to format source files. [INFO] Number of files to be formatted: 11 [INFO] Successfully formatted: 0 file(s) [INFO] Fail to format: 0 file(s) [INFO] Skipped: 11 file(s) [INFO] Read only skipped: 0 file(s) [INFO] Approximate time taken: 0s [INFO] [INFO] --- impsort-maven-plugin:1.4.1:sort (sort-imports) @ dhp-swh --- [INFO] Total Files Processed: 11 in 00:00.131 [INFO] Already Sorted: 11 [INFO] Needed Sorting: 0 [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:compile (default-compile) @ dhp-swh --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ dhp-swh --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.6.0:testCompile (default-testCompile) @ dhp-swh --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M4:test (default-test) @ dhp-swh --- [INFO] Skipping execution of surefire because it has already been run for this configuration [JENKINS] Recording test results[INFO] [INFO] --- jacoco-maven-plugin:0.7.9:report (default-report) @ dhp-swh --- [INFO] Loading execution data file /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/jacoco.exec [INFO] Analyzed bundle 'dhp-swh' with 9 classes [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ dhp-swh --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/dhp-swh-1.2.5-SNAPSHOT.jar [INFO] [INFO] >>> maven-source-plugin:3.0.1:jar (default-cli) > generate-sources @ dhp-swh >>> [INFO] [INFO] --- mvn-scalafmt_2.11:1.0.1640073709.733712b:format (default) @ dhp-swh --- [INFO] Reading config from https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf [INFO] Writing remote config to /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/.scalafmt.conf [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/main/scala [WARNING] Could not locate Scala source at /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/src/test/scala [INFO] Scalafmt results: 0 of 0 were unformatted Details: [INFO] [INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (default-prepare-agent) @ dhp-swh --- [INFO] argLine set to -javaagent:/var/lib/jenkins/.m2/repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/jacoco.exec,excludes=**/schemas/*:**/com/cloudera/**/*:**/org/apache/avro/io/**/* [WARNING] Failed to getClass for org.apache.maven.plugins.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:3.0.1:jar (default-cli) < generate-sources @ dhp-swh <<< [INFO] [INFO] [INFO] --- maven-source-plugin:3.0.1:jar (default-cli) @ dhp-swh --- [INFO] Building jar: /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/dhp-swh-1.2.5-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for dhp 1.2.5-SNAPSHOT: [INFO] [INFO] dhp-code-style ..................................... SUCCESS [ 4.238 s] [INFO] dhp ................................................ SUCCESS [ 2.780 s] [INFO] dhp-build .......................................... SUCCESS [ 1.373 s] [INFO] dhp-build-assembly-resources ....................... SUCCESS [ 3.039 s] [INFO] dhp-build-properties-maven-plugin .................. SUCCESS [ 13.039 s] [INFO] dhp-pace-core ...................................... SUCCESS [ 33.297 s] [INFO] dhp-common ......................................... SUCCESS [01:10 min] [INFO] dhp-workflows ...................................... SUCCESS [ 2.175 s] [INFO] dhp-workflow-profiles .............................. SUCCESS [ 3.068 s] [INFO] dhp-aggregation .................................... SUCCESS [ 01:56 h] [INFO] dhp-actionmanager .................................. SUCCESS [ 33.839 s] [INFO] dhp-graph-mapper ................................... SUCCESS [ 01:15 h] [INFO] dhp-dedup-openaire ................................. SUCCESS [ 58.959 s] [INFO] dhp-enrichment ..................................... SUCCESS [12:44 min] [INFO] dhp-graph-provision ................................ SUCCESS [02:32 min] [INFO] dhp-blacklist ...................................... SUCCESS [ 37.847 s] [INFO] dhp-stats-actionsets ............................... SUCCESS [ 3.976 s] [INFO] dhp-stats-hist-snaps ............................... SUCCESS [ 3.105 s] [INFO] dhp-stats-monitor-irish ............................ SUCCESS [ 3.110 s] [INFO] dhp-stats-monitor-update ........................... SUCCESS [ 3.063 s] [INFO] dhp-stats-update ................................... SUCCESS [ 3.266 s] [INFO] dhp-stats-promote .................................. SUCCESS [ 3.087 s] [INFO] dhp-usage-stats-build .............................. SUCCESS [ 6.051 s] [INFO] dhp-usage-raw-data-update .......................... SUCCESS [ 5.560 s] [INFO] dhp-broker-events .................................. SUCCESS [ 18.959 s] [INFO] dhp-doiboost ....................................... SUCCESS [02:27 min] [INFO] dhp-impact-indicators .............................. SUCCESS [ 4.832 s] [INFO] dhp-swh ............................................ SUCCESS [ 21.858 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 03:36 h [INFO] Finished at: 2024-04-16T22:34:36Z [INFO] ------------------------------------------------------------------------ Waiting for Jenkins to finish collecting data [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/pom.xml to eu.dnetlib.dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-enrichment/target/dhp-enrichment-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-enrichment/1.2.5-SNAPSHOT/dhp-enrichment-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/pom.xml to eu.dnetlib.dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-promote/target/dhp-stats-promote-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-promote/1.2.5-SNAPSHOT/dhp-stats-promote-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/pom.xml to eu.dnetlib.dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-actionmanager/target/dhp-actionmanager-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-actionmanager/1.2.5-SNAPSHOT/dhp-actionmanager-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/pom.xml to eu.dnetlib.dhp/dhp-pace-core/1.2.5-SNAPSHOT/dhp-pace-core-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/dhp-pace-core-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-pace-core/1.2.5-SNAPSHOT/dhp-pace-core-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-pace-core/target/dhp-pace-core-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-pace-core/1.2.5-SNAPSHOT/dhp-pace-core-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/pom.xml to eu.dnetlib.dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-blacklist/target/dhp-blacklist-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-blacklist/1.2.5-SNAPSHOT/dhp-blacklist-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/pom.xml to eu.dnetlib.dhp/dhp-swh/1.2.5-SNAPSHOT/dhp-swh-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/dhp-swh-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-swh/1.2.5-SNAPSHOT/dhp-swh-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-swh/target/dhp-swh-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-swh/1.2.5-SNAPSHOT/dhp-swh-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/pom.xml to eu.dnetlib.dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-aggregation/target/dhp-aggregation-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-aggregation/1.2.5-SNAPSHOT/dhp-aggregation-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/pom.xml to eu.dnetlib.dhp/dhp-stats-monitor-irish/1.2.5-SNAPSHOT/dhp-stats-monitor-irish-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/dhp-stats-monitor-irish-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-monitor-irish/1.2.5-SNAPSHOT/dhp-stats-monitor-irish-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-irish/target/dhp-stats-monitor-irish-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-monitor-irish/1.2.5-SNAPSHOT/dhp-stats-monitor-irish-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/pom.xml to eu.dnetlib.dhp/dhp-code-style/1.2.5-SNAPSHOT/dhp-code-style-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-code-style/1.2.5-SNAPSHOT/dhp-code-style-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-code-style/target/dhp-code-style-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-code-style/1.2.5-SNAPSHOT/dhp-code-style-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/pom.xml to eu.dnetlib.dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-update/target/dhp-stats-update-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-update/1.2.5-SNAPSHOT/dhp-stats-update-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/pom.xml to eu.dnetlib.dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-properties-maven-plugin/target/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-build-properties-maven-plugin/1.2.5-SNAPSHOT/dhp-build-properties-maven-plugin-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/pom.xml to eu.dnetlib.dhp/dhp-impact-indicators/1.2.5-SNAPSHOT/dhp-impact-indicators-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/dhp-impact-indicators-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-impact-indicators/1.2.5-SNAPSHOT/dhp-impact-indicators-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-impact-indicators/target/dhp-impact-indicators-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-impact-indicators/1.2.5-SNAPSHOT/dhp-impact-indicators-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/pom.xml to eu.dnetlib.dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-raw-data-update/target/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-usage-raw-data-update/1.2.5-SNAPSHOT/dhp-usage-raw-data-update-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/pom.xml to eu.dnetlib.dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-workflow-profiles/target/dhp-workflow-profiles-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-workflow-profiles/1.2.5-SNAPSHOT/dhp-workflow-profiles-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/pom.xml to eu.dnetlib.dhp/dhp-stats-monitor-update/1.2.5-SNAPSHOT/dhp-stats-monitor-update-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/dhp-stats-monitor-update-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-monitor-update/1.2.5-SNAPSHOT/dhp-stats-monitor-update-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-monitor-update/target/dhp-stats-monitor-update-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-monitor-update/1.2.5-SNAPSHOT/dhp-stats-monitor-update-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/pom.xml to eu.dnetlib.dhp/dhp-workflows/1.2.5-SNAPSHOT/dhp-workflows-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/pom.xml to eu.dnetlib.dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-provision/target/dhp-graph-provision-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-graph-provision/1.2.5-SNAPSHOT/dhp-graph-provision-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/pom.xml to eu.dnetlib.dhp/dhp-stats-hist-snaps/1.2.5-SNAPSHOT/dhp-stats-hist-snaps-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/dhp-stats-hist-snaps-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-hist-snaps/1.2.5-SNAPSHOT/dhp-stats-hist-snaps-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-hist-snaps/target/dhp-stats-hist-snaps-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-hist-snaps/1.2.5-SNAPSHOT/dhp-stats-hist-snaps-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/pom.xml to eu.dnetlib.dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-usage-stats-build/target/dhp-usage-stats-build-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-usage-stats-build/1.2.5-SNAPSHOT/dhp-usage-stats-build-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/pom.xml to eu.dnetlib.dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/dhp-build-assembly-resources/target/dhp-build-assembly-resources-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-build-assembly-resources/1.2.5-SNAPSHOT/dhp-build-assembly-resources-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/pom.xml to eu.dnetlib.dhp/dhp-stats-actionsets/1.2.5-SNAPSHOT/dhp-stats-actionsets-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/dhp-stats-actionsets-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-stats-actionsets/1.2.5-SNAPSHOT/dhp-stats-actionsets-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-stats-actionsets/target/dhp-stats-actionsets-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-stats-actionsets/1.2.5-SNAPSHOT/dhp-stats-actionsets-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/pom.xml to eu.dnetlib.dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-dedup-openaire/target/dhp-dedup-openaire-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-dedup-openaire/1.2.5-SNAPSHOT/dhp-dedup-openaire-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-build/pom.xml to eu.dnetlib.dhp/dhp-build/1.2.5-SNAPSHOT/dhp-build-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/pom.xml to eu.dnetlib.dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-graph-mapper/target/dhp-graph-mapper-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-graph-mapper/1.2.5-SNAPSHOT/dhp-graph-mapper-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/pom.xml to eu.dnetlib.dhp/dhp-common/1.2.5-SNAPSHOT/dhp-common-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/dhp-common-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-common/1.2.5-SNAPSHOT/dhp-common-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-common/target/dhp-common-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-common/1.2.5-SNAPSHOT/dhp-common-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/pom.xml to eu.dnetlib.dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-doiboost/target/dhp-doiboost-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-doiboost/1.2.5-SNAPSHOT/dhp-doiboost-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/pom.xml to eu.dnetlib.dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT.pom [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT.jar to eu.dnetlib.dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/dhp-workflows/dhp-broker-events/target/dhp-broker-events-1.2.5-SNAPSHOT-sources.jar to eu.dnetlib.dhp/dhp-broker-events/1.2.5-SNAPSHOT/dhp-broker-events-1.2.5-SNAPSHOT-sources.jar [JENKINS] Archiving /var/lib/jenkins/workspace/dnet-hadoop_branch_beta/pom.xml to eu.dnetlib.dhp/dhp/1.2.5-SNAPSHOT/dhp-1.2.5-SNAPSHOT.pom channel stopped [Slack Notifications] found #1002 as previous completed, non-aborted build [Slack Notifications] will send OnUnstableNotification because build matches and user preferences allow it ERROR: Build step failed with exception java.lang.IllegalArgumentException: the credential with the provided ID () could not be found and no token was specified at jenkins.plugins.slack.CredentialsObtainer.getTokenToUse(CredentialsObtainer.java:57) at jenkins.plugins.slack.SlackNotifier.newSlackService(SlackNotifier.java:582) at jenkins.plugins.slack.SlackNotifier.lambda$slackFactory$0(SlackNotifier.java:623) at jenkins.plugins.slack.ActiveNotifier.completed(ActiveNotifier.java:130) at jenkins.plugins.slack.SlackNotifier.perform(SlackNotifier.java:607) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:816) at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:765) at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.cleanUp(MavenModuleSetBuild.java:1097) at hudson.model.Run.execute(Run.java:1944) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543) at hudson.model.ResourceController.execute(ResourceController.java:101) at hudson.model.Executor.run(Executor.java:442) Build step 'Slack Notifications' marked build as failure Finished: UNSTABLE